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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Albinism Skin hair eye pigmentation variation
1 gene
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1 of 1 corroborated by 2+ sources
TPCN2(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 298 →
amyotrophic lateral sclerosis type 1 Bonnevie-ullrich syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 285 →
Anaphylaxis Congenital high-molecular-weight kininogen deficiency
1 gene
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1 of 1 corroborated by 2+ sources
KNG1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Anaphylaxis Hyperesthesia
1 gene
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KNG1(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Anaphylaxis Infantile neurological cutaneous and articular syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 192 →
Anaphylaxis Cinca syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 192 →
Angiofollicular ganglionic hyperplasia Prediabetes
1 gene
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IL6(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Angiolymphoid hyperplasia Prediabetes
1 gene
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IL6(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Anterior compartment syndrome Intracranial vasospasm
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 371 →
Hereditary hemorrhagic telangiectasia Myhre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SMAD4(5)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in CRPPA
1 gene
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1 of 1 corroborated by 2+ sources
CRPPA(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in FKRP
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Congenital muscular dystrophy due to dystroglycanopathy myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 14 →
Nausea Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Eye pain Nausea
1 gene
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POMC(1)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Hallervorden spatz syndrome neurodegeneration with brain iron accumulation 4
1 gene
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1 of 1 corroborated by 2+ sources
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 92 →
Iron overload neurodegeneration with brain iron accumulation 9
1 gene
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1 of 1 corroborated by 2+ sources
FTH1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Epidermal nevus Neurofibrosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
NRAS(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Neurofibrosarcoma Nonmedullary thyroid cancer
1 gene
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1 of 1 corroborated by 2+ sources
NRAS(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 18 →
Distal muscular dystrophy neuronopathy, distal hereditary motor, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
HSPB8(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Benign hereditary chorea NKX2-1 related choreoathetosis and congenital hypothyroidism with or without pulmonary dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
NKX2-1(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
non-syndromic X-linked intellectual disability Say meyer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HUWE1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 122 →
Exudative retinopathy norrie disease
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
46,xy sex reversal NR5A1-related sex development disorder
1 gene
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1 of 1 corroborated by 2+ sources
NR5A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 38 →
Focal cortical dysplasia NTHL1-deficiency tumor predisposition syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NTHL1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 70 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.