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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Choroidal melanoma Warburg-cinotti syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Choroidal melanoma spondyloepimetaphyseal dysplasia-short limb-abnormal calcification syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDR2(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Choroidal neovascularization Diabetes microvascular complications
1 gene
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1 of 1 corroborated by 2+ sources
VEGFA(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 305 →
Chromophobe renal cell carcinoma Idiopathic diabetes
1 gene
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1 of 1 corroborated by 2+ sources
HNF1A(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Chromosome 17p13.3 microdeletion syndrome Clear cell sarcoma of kidney
1 gene
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1 of 1 corroborated by 2+ sources
YWHAE(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 223 →
Chromosome 22q11.2 deletion syndrome Pulmonary surfactant metabolism dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
ABCA3(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Chronic pain Congenital insensitivity to pain
1 gene
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1 of 1 corroborated by 2+ sources
SCN9A(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 164 →
Cinca syndrome Cold autoinflammatory syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP3(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 192 →
Clear cell sarcoma of kidney dyskeratosis congenita, autosomal dominant 2
1 gene
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1 of 1 corroborated by 2+ sources
TERT(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Clear cell sarcoma of kidney microphthalmia, syndromic 2
1 gene
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1 of 1 corroborated by 2+ sources
BCOR(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 223 →
Cleft lip with or without cleft palate Hereditary diffuse gastric and lobular breast cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 312 →
17q23.1q23.2 microdeletion syndrome Clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Amelia Clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Chromosome 17q23.1-q23.2 duplication syndrome Clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Clubfoot Coxopodopatellar syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX4(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 24 →
Cockayne syndrome xeroderma pigmentosum group F
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Benign infantile epilepsy Cognitive impairment with or without cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Cognitive impairment with or without cerebellar ataxia Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(5)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Lobular carcinoma Sebastian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Lobular carcinoma macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Breast implant-associated anaplastic large cell lymphoma Lymphoproliferative disorder of natural killer cells
1 gene
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STAT3(1)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Cafe-au-lait spots LZTR1-related schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Congenital malformation syndromes associated with short stature LZTR1-related schwannomatosis
1 gene
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1 of 1 corroborated by 2+ sources
LZTR1(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
Autosomal dominant sensorineural deafness macrothrombocytopenia and granulocyte inclusions with or without nephritis or sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
MYH9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. —
46,xx ovotesticular disorder of sex development MCM9-related gametogenic failure
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 38 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.