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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Epidermolytic ichthyosis Epidermolytic palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 230 →
Benign mucous membrane pemphigoid with ocular involvement Thromboangiitis obliterans
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Hyperthyroxinemia Thyroid hormone metabolism disorder
1 gene
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1 of 1 corroborated by 2+ sources
DIO1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 182 →
Benign mucous membrane pemphigoid with ocular involvement Tongue cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Malignant hypertension Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 95 →
Autoimmune pancreatitis Tonsil cancer
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Tongue cancer Tonsil cancer
1 gene
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0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 1 →
Intracranial arteriovenous malformation Toriello-carey syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRAS(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Cardiac rhythm disease Torsades de pointes
1 gene
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1 of 1 corroborated by 2+ sources
SCN5A(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 129 →
Encephalocraniocutaneous lipomatosis Trigonocephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 185 →
Vaginal neoplasms Vipoma
1 gene
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IFNA1(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Factor v deficiency Venous hypertension
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 37 →
Ameloblastoma Ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Anaplastic astrocytoma Ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Brachyolmia Verloes-bourguignon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP3(5)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Geleophysic dysplasia Verloes-bourguignon syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LTBP3(6)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 52 →
Keratitis-ichthyosis-deafness syndrome Vohwinkel syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB2(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Hemophilia b Warfarin sensitivity
1 gene
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1 of 1 corroborated by 2+ sources
F9(8)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
12q14 microdeletion syndrome Well-differentiated liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Craniopharyngioma Weyers acrofacial dysostosis
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(3)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Digenic alport syndrome X-linked diffuse leiomyomatosis with alport syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A5(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 49 →
Cryohydrocytosis Xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(4)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Deafness with congenital onychodystrophy Zimmermann-laband syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 90 →
Doors syndrome Zimmermann-laband syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 90 →
Thrombocythemia with distal limb defects Thrombocytosis
1 gene
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1 of 1 corroborated by 2+ sources
THPO(4)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 53 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.