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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cleft lip and palate Uranostaphyloschisis
2 genes
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IRF6(1), ARHGAP29(1)
0.053 0.133 2.41e-4 6.51e-4 ✓ sig. —
Epithelial ovarian carcinoma Optic neuritis
2 genes
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2 of 2 corroborated by 2+ sources
GSTT1(2), GSTM1(2)
0.050 0.154 2.46e-4 6.51e-4 ✓ sig. —
Dry eye syndrome Uveitis
3 genes
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1 of 3 corroborated by 2+ sources
IL1B(1), IL6(1), TGFB1(2)
0.034 0.091 2.43e-4 6.51e-4 ✓ sig. —
Epithelial ovarian carcinoma Hirschsprung disease
3 genes
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3 of 3 corroborated by 2+ sources
GSTT1(2), GSTM1(2), ERBB2(4)
0.032 0.107 2.39e-4 6.51e-4 ✓ sig. —
Bile acid malabsorption Cholelithiasis
2 genes
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1 of 2 corroborated by 2+ sources
RASL12(1), SLC51B(4)
0.014 0.667 2.41e-4 6.51e-4 ✓ sig. —
Non-specific syndromic intellectual disability Tessadori-van haaften neurodevelopmental syndrome
3 genes
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3 of 3 corroborated by 2+ sources
H4C3(5), H4C5(6), H4C9(5)
0.008 0.500 2.57e-4 6.51e-4 ✓ sig. —
Charcot-marie-tooth disease Spinocerebellar ataxia
6 genes
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6 of 6 corroborated by 2+ sources
MME(8), SETX(6), PLD3(5), IFRD1(3), POLG(2), PRX(8)
0.026 0.058 2.70e-4 6.77e-4 ✓ sig. —
Hoarding disorder Pericarditis
2 genes
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LRRC3B(1), NEK10(1)
0.053 0.105 2.70e-4 6.78e-4 ✓ sig. Cluster 278 →
Auditory system disease Benign prostatic hyperplasia
2 genes
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BMAL1(1), RASSF10(1)
0.044 0.182 2.73e-4 6.83e-4 ✓ sig. —
Congenital adrenal hyperplasia Ovarian cysts
2 genes
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1 of 2 corroborated by 2+ sources
CYP17A1(3), MSH2(1)
0.044 0.182 2.73e-4 6.83e-4 ✓ sig. —
Patent ductus arteriosus Uranostaphyloschisis
2 genes
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FLNA(1), INPP5E(1)
0.051 0.125 2.76e-4 6.90e-4 ✓ sig. —
Spondylosis Vertebral column disorder
2 genes
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SOX5(1), HLA-B(1)
0.048 0.154 2.82e-4 7.07e-4 ✓ sig. —
Dyskinesia Dyskinesia, drug-induced
2 genes
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2 of 2 corroborated by 2+ sources
PDYN(2), DRD2(2)
0.050 0.133 2.84e-4 7.11e-4 ✓ sig. —
Cirrhosis Liver neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
KRT8(3), KRT18(4)
0.013 0.667 2.89e-4 7.22e-4 ✓ sig. —
Osteosclerosis Otosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
LTBP3(3), TNFSF11(2)
0.034 0.250 2.97e-4 7.44e-4 ✓ sig. —
Congenital diaphragmatic hernia Fraser syndrome
2 genes
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2 of 2 corroborated by 2+ sources
FRAS1(7), FREM2(6)
0.051 0.100 3.00e-4 7.52e-4 ✓ sig. —
Galloway-mowat syndrome Genetic steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.044 0.167 3.08e-4 7.71e-4 ✓ sig. Cluster 30 →
Galloway-mowat syndrome Hereditary steroid-resistant nephrotic syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NUP107(5), NUP133(6)
0.044 0.167 3.08e-4 7.71e-4 ✓ sig. Cluster 30 →
Cerebral amyloid angiopathy Vascular dementia
5 genes
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3 of 5 corroborated by 2+ sources
APP(6), ITM2B(3), APOE(3), GRIK2(1), PRNP(1)
0.026 0.070 3.08e-4 7.71e-4 ✓ sig. —
CDKL5 disorder Retinoschisis
1 gene
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1 of 1 corroborated by 2+ sources
CDKL5(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. —
Central areolar choroidal dystrophy PRPH2-related retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
PRPH2(4)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Central areolar choroidal dystrophy GUCY2D-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
GUCY2D(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 45 →
Cerebellar atrophy with seizures and variable developmental delay generalized epilepsy-paroxysmal dyskinesia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 58 →
Cerebelloparenchymal disorder Ptosis
1 gene
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1 of 1 corroborated by 2+ sources
PMPCA(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 133 →
Cerebral saccular aneurysm Connective and soft tissue disorder
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 334 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.