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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Gliosarcoma Hemangiosarcoma
2 genes
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1 of 2 corroborated by 2+ sources
TP53(2), VEGFA(1)
0.061 0.125 1.53e-4 4.63e-4 ✓ sig. —
Body weight Diabetic nephropathy type 2
2 genes
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2 of 2 corroborated by 2+ sources
CDKAL1(2), FTO(2)
0.061 0.125 1.53e-4 4.63e-4 ✓ sig. Cluster 73 →
Hyperopia Vertebral, cardiac, renal, and limb defects syndrome
2 genes
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2 of 2 corroborated by 2+ sources
KYNU(6), NADSYN1(5)
0.024 0.500 1.55e-4 4.67e-4 ✓ sig. Cluster 386 →
Lymphoid leukemia Ocular sarcoidosis
3 genes
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ALDH1A2(1), LIPC(1), HLA-DQB1(1)
0.036 0.107 1.55e-4 4.68e-4 ✓ sig. —
B-cell chronic lymphocytic leukemia Diamond-blackfan anemia
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), RPS15(2)
0.045 0.250 1.56e-4 4.70e-4 ✓ sig. —
Cerebellar ataxia Diencephalic mesencephalic junction dysplasia
2 genes
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1 of 2 corroborated by 2+ sources
PCDH12(5), RNF14(1)
0.017 0.667 1.62e-4 4.89e-4 ✓ sig. —
Esophageal disease Esotropia
2 genes
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2 of 2 corroborated by 2+ sources
SOD2(3), TRPV1(2)
0.051 0.200 1.64e-4 4.93e-4 ✓ sig. —
Amblyopia Eye neoplasms
2 genes
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NPLOC4(1), OCA2(1)
0.056 0.167 1.65e-4 4.98e-4 ✓ sig. —
Combined immunodeficiency disease Tubular aggregate myopathy
2 genes
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2 of 2 corroborated by 2+ sources
ORAI1(5), STIM1(5)
0.040 0.286 1.66e-4 5.00e-4 ✓ sig. —
Brain infarction Ventricular dysfunction
3 genes
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3 of 3 corroborated by 2+ sources
ALDH2(2), PLAT(2), SIRT1(2)
0.038 0.083 1.66e-4 5.01e-4 ✓ sig. —
Gastroparesis Internet addiction disorder
2 genes
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1 of 2 corroborated by 2+ sources
PRKG1(1), NRG1(2)
0.053 0.182 1.74e-4 5.23e-4 ✓ sig. —
Dyslipidemias Osteopetrosis
2 genes
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2 of 2 corroborated by 2+ sources
TNFRSF11A(6), TCIRG1(8)
0.059 0.118 1.74e-4 5.23e-4 ✓ sig. —
Desmoid tumor Refractory anemia
1 gene
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1 of 1 corroborated by 2+ sources
TNF(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Desmoid tumor Intellectual developmental disorder dysmorphic ocular microcephaly peripheral
1 gene
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1 of 1 corroborated by 2+ sources
CTNNB1(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Desmoid tumor Familial adenomatous polyposis
1 gene
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1 of 1 corroborated by 2+ sources
APC(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 41 →
Dias-logan syndrome Intellectual developmental disorder hemoglobin persistence
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Diffuse nonepidermolytic palmoplantar keratoderma Epidermolytic palmoplantar keratoderma
1 gene
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1 of 1 corroborated by 2+ sources
KRT1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 230 →
Deafness, onychodystrophy, osteodystrophy, impaired intellectual development, and seizures syndrome Digitrenocerebral syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 90 →
Digitrenocerebral syndrome Focal epilepsy-intellectual disability-cerebro-cerebellar malformation
1 gene
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1 of 1 corroborated by 2+ sources
TBC1D24(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 90 →
Dominantly inherited sensory neuropathy hereditary sensory and autonomic neuropathy type 6
1 gene
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1 of 1 corroborated by 2+ sources
DST(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dominantly inherited sensory neuropathy hereditary sensory and autonomic neuropathy type 7
1 gene
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1 of 1 corroborated by 2+ sources
SCN11A(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dopamine transporter deficiency syndrome Parkinsonism-dystonia
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 392 →
Dysalbuminemic hyperthyroxinemia Hyperthyroxinemia
1 gene
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1 of 1 corroborated by 2+ sources
ALB(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dyschromatosis Dyschromatosis symmetrica hereditaria
1 gene
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1 of 1 corroborated by 2+ sources
SASH1(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Dyschromatosis symmetrica hereditaria microphthalmia, isolated, with coloboma 7
1 gene
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1 of 1 corroborated by 2+ sources
ABCB6(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.