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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
ATP6AP2-related disorder Parkinsonism with spasticity, x-linked
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
ATP6AP2-related disorder X-linked parkinsonism-spasticity syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATP6AP2(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atr-x syndrome X-linked alpha-thalassemia-intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ATRX(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 122 →
atransferrinemia Congenital atransferrinemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atrophia bulborum heritaria Coats disease
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atrophia bulborum heritaria norrie disease
1 gene
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1 of 1 corroborated by 2+ sources
NDP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atrophoderma vermiculata Burnett schwartz berberian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 194 →
Atrophoderma vermiculata Tricuspid atresia
1 gene
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1 of 1 corroborated by 2+ sources
LRP1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 194 →
Atypical absence epilepsy Minor epilepsy
1 gene
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NPY(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atypical absence epilepsy Nasal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atypical absence seizure Stress-induced neurodegenerative ataxia seizure syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ADPRS(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
atypical hemolytic-uremic syndrome with DGKE deficiency membranoproliferative glomerulonephritis
1 gene
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DGKE(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Atypical multiple mole melanoma syndrome Trisomy
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 384 →
Atypical multiple mole melanoma syndrome melanoma-pancreatic cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDKN2A(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 384 →
Autism-epilepsy syndrome Branched-chain keto acid dehydrogenase kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoimmune enteropathy and endocrinopathy immunodeficiency 31b
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoimmune enteropathy and endocrinopathy Mendelian susceptibility to mycobacterial diseases due to partial STAT1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
STAT1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
autoimmune lymphoproliferative syndrome type 2B Caspase 8 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoimmune pulmonary alveolar proteinosis Heerfordt syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 1 →
Autoimmunity-autoinflammation-immunodeficiency syndrome Autoinflammatory syndrome with immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 321 →
Autoimmunity-autoinflammation-immunodeficiency syndrome Autoinflammatory syndrome, familial, with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
SOCS1(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 321 →
Autoinflammation with arthritis and dyskeratosis Corneal intraepithelial dyskeratosis-palmoplantar hyperkeratosis-laryngeal dyskeratosis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NLRP1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoinflammation with arthritis and vasculitis frontotemporal dementia and/or amyotrophic lateral sclerosis 4
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Autoinflammation, panniculitis, and dermatosis syndrome, autosomal dominant Autoinflammation, panniculitis, and dermatosis syndrome, autosomal recessive
1 gene
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1 of 1 corroborated by 2+ sources
OTULIN(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 208 →
Autoinflammatory disease, multisystem, with immune dysregulation, x-linked Early-onset immune dysregulation due to dock11 complete deficiency
1 gene
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1 of 1 corroborated by 2+ sources
DOCK11(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.