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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Esophageal varices Portal hypertension
2 genes
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PNPLA3(1), HAPLN4(1)
0.111 0.500 5.31e-6 2.74e-5 ✓ sig. Cluster 270 →
Brachydactyly Synpolydactyly
2 genes
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1 of 2 corroborated by 2+ sources
HOXD13(7), CHST11(1)
0.087 0.667 5.31e-6 2.74e-5 ✓ sig. —
Right atrial isomerism Situs ambiguus
2 genes
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1 of 2 corroborated by 2+ sources
CERS1(1), GDF1(3)
0.087 0.667 5.31e-6 2.74e-5 ✓ sig. —
Intellectual disability with craniofacial anomalies and cardiac defects syndromic intellectual disability
2 genes
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2 of 2 corroborated by 2+ sources
KAT6A(3), H1-4(2)
0.054 1.000 5.31e-6 2.75e-5 ✓ sig. —
Dry eye syndrome Peptic ulcer disease
6 genes
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2 of 6 corroborated by 2+ sources
TWIST2(1), MAML3(1), IL1B(2), ADAMTSL3(1), MUC1(2), KCNB2(1)
0.035 0.105 5.44e-6 2.81e-5 ✓ sig. —
Hemiplegic migraine Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(3), SCN1A(3)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Alcoholic hepatitis Angina pectoris
2 genes
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TNF(1), CXCL8(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. Cluster 76 →
Congenital aneurysm of ascending aorta Visceral myopathy
2 genes
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1 of 2 corroborated by 2+ sources
MYH11(4), MYLK(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
familial thoracic aortic aneurysm and aortic dissection Visceral myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH11(5), MYLK(2)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Alcoholic hepatitis Cachexia
2 genes
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TNF(1), CXCL8(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. Cluster 76 →
Congenital stationary night blindness Ocular albinism
2 genes
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1 of 2 corroborated by 2+ sources
CACNA1F(2), CABP4(1)
0.125 0.400 5.56e-6 2.87e-5 ✓ sig. —
Fanconi-bickel syndrome Glycogen storage disease
2 genes
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2 of 2 corroborated by 2+ sources
LDHA(5), SLC2A2(5)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. —
Diamond-blackfan anemia Ovarian agenesis
2 genes
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1 of 2 corroborated by 2+ sources
DIPK1A(1), RPL5(7)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. Cluster 236 →
Diamond-blackfan anemia Erythroid hypoplasia
2 genes
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1 of 2 corroborated by 2+ sources
DIPK1A(1), RPL5(7)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. Cluster 236 →
Autoinflammatory syndrome X-linked lymphoproliferative syndrome
2 genes
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2 of 2 corroborated by 2+ sources
XIAP(5), SH2D1A(5)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. —
Noonan syndrome Noonan syndrome-like disorder with loose anagen hair
2 genes
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2 of 2 corroborated by 2+ sources
SHOC2(7), PPP1CB(6)
0.053 1.000 5.62e-6 2.89e-5 ✓ sig. Cluster 42 →
Angioedema Thrombophilia
4 genes
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3 of 4 corroborated by 2+ sources
PLAT(4), SLC19A2(1), F5(6), PLG(4)
0.047 0.125 5.62e-6 2.89e-5 ✓ sig. —
Angelman syndrome Cyclin-dependent kinase-like 5 deficiency
2 genes
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1 of 2 corroborated by 2+ sources
CDKL5(3), MECP2(1)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. Cluster 61 →
Erythropoietic protoporphyria Porphyria
2 genes
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2 of 2 corroborated by 2+ sources
ALAS2(3), FECH(8)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. —
Berardinelli-seip congenital lipodystrophy Partial lipodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
PPARG(1), CAV1(3)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. Cluster 71 →
Berylliosis Cervical disc degenerative disorder
2 genes
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2 of 2 corroborated by 2+ sources
TNF(2), TGFB1(2)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. Cluster 180 →
Delirium Pituitary neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
IGF1(2), DRD2(2)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. —
Axenfeld-rieger syndrome Tooth abnormalities
2 genes
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1 of 2 corroborated by 2+ sources
PAX6(1), PITX2(6)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. —
Pancreatic diseases Vascular system injury
2 genes
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SPP1(1), HMOX1(1)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. —
Hemolysis Vascular system injury
2 genes
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HMOX1(1), ATP7A(1)
0.133 0.333 5.69e-6 2.92e-5 ✓ sig. Cluster 371 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.