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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Double outlet right ventricle Right atrial isomerism
2 genes
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1 of 2 corroborated by 2+ sources
CERS1(1), GDF1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 113 →
Early onset vitamin b6 dependent epilepsy Pyridoxine dependent epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
ALDH7A1(4), PLPBP(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. —
Bouillaud’s disease Obstructive asthma
2 genes
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2 of 2 corroborated by 2+ sources
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 1 →
Shprintzen-goldberg syndrome Thoracoabdominal aortic aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
SKI(6), FBN1(4)
0.200 0.667 7.08e-7 4.27e-6 ✓ sig. Cluster 66 →
Gastritis Optic neuritis
3 genes
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1 of 3 corroborated by 2+ sources
HLA-DRB1(1), GSTM1(1), HLA-DQB1(2)
0.091 0.231 7.17e-7 4.32e-6 ✓ sig. Cluster 1 →
Erythematosquamous dermatosis Oculocutaneous albinism
3 genes
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3 of 3 corroborated by 2+ sources
TYR(6), MC1R(5), SLC45A2(6)
0.091 0.231 7.17e-7 4.32e-6 ✓ sig. —
Immunodeficiency Interferon gamma receptor deficiency
3 genes
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2 of 3 corroborated by 2+ sources
IFNGR2(5), IFNGR1(5), TMEM50B(1)
0.021 1.000 7.20e-7 4.33e-6 ✓ sig. Cluster 10 →
Lipoma Meningioma
3 genes
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3 of 3 corroborated by 2+ sources
PTEN(2), TERT(2), BAP1(2)
0.088 0.250 7.25e-7 4.36e-6 ✓ sig. —
Blood coagulation disorder Lipoma
3 genes
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1 of 3 corroborated by 2+ sources
SLC19A2(1), F5(3), NME7(1)
0.088 0.250 7.25e-7 4.36e-6 ✓ sig. —
Peripheral vascular disease Venous insufficiency
3 genes
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ABO(1), SLC19A2(1), F5(1)
0.075 0.333 7.47e-7 4.49e-6 ✓ sig. —
Myeloproliferative disorder Small vessel stroke
5 genes
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SH2B3(1), ATXN2(1), STN1(1), PMF1(1), PMF1-BGLAP(1)
0.051 0.100 7.50e-7 4.51e-6 ✓ sig. —
Autoimmune polyendocrine syndrome Cryoglobulinemia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cryoglobulinemia Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Cold paroxysmal hemoglobinuria
2 genes
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0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Central nervous system disease Diabetes microvascular complications
2 genes
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2 of 2 corroborated by 2+ sources
EPO(2), SOD2(3)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 305 →
Cerebral cavernous malformation Developmental venous anomaly
2 genes
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2 of 2 corroborated by 2+ sources
PDCD10(7), CCM2(7)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 308 →
Autoimmune polyendocrine syndrome Cervical intraepithelial neoplasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cervical intraepithelial neoplasia Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Cervical intraepithelial neoplasia Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Budd-chiari syndrome Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
JAK2(4), CALR(3)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. —
Cafe-au-lait spots Neurofibromatosis
2 genes
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2 of 2 corroborated by 2+ sources
NF1(6), SPRED1(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 77 →
Cafe-au-lait spots Neurofibromatosis-noonan syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NF1(6), SPRED1(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 77 →
Carotid artery thrombosis Thrombasthenia
2 genes
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2 of 2 corroborated by 2+ sources
ITGB3(2), ITGA2B(2)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 33 →
Autoimmune polyendocrine syndrome Paroxysmal nocturnal hemoglobinuria
2 genes
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0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 1 →
Primary graft dysfunction Vascular remodeling
2 genes
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GATA2(1), SENP1(1)
0.222 0.500 7.59e-7 4.54e-6 ✓ sig. Cluster 136 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.