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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Cyanosis Delta-beta thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(4), HBG2(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 19 →
Delta-beta thalassemia Hemoglobin e disease
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), HBD(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. Cluster 19 →
Delta-beta thalassemia Thalassemia
2 genes
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2 of 2 corroborated by 2+ sources
HBB(3), HBD(3)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Cleft eyelid Commissural facial cleft
2 genes
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2 of 2 corroborated by 2+ sources
PAX6(2), SALL2(4)
0.250 0.500 5.06e-7 3.14e-6 ✓ sig. —
Aortic stenosis Heart valve disease
5 genes
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FADS1(1), FADS2(1), MECOM(1), CELSR2(1), LPA(1)
0.052 0.122 5.10e-7 3.16e-6 ✓ sig. —
Acromesomelic dysplasia Geleophysic dysplasia
2 genes
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2 of 2 corroborated by 2+ sources
FBN1(6), LTBP3(6)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 52 →
Nausea Orthostatic hypotension
2 genes
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2 of 2 corroborated by 2+ sources
OPRM1(2), ABCB1(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 57 →
Nonmedullary thyroid cancer Schimmelpenning-feuerstein-mims syndrome
2 genes
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2 of 2 corroborated by 2+ sources
NRAS(2), HRAS(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 18 →
Rippling muscle disease Tubular aggregate myopathy
2 genes
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1 of 2 corroborated by 2+ sources
OXTR(1), CAV3(6)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 217 →
Bouillaud’s disease Vogt-koyanagi-harada disease
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Skeletal system disease Vogt-koyanagi-harada disease
2 genes
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1 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Vogt-koyanagi-harada disease Wheat allergic reaction
2 genes
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1 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Diencephalic mesencephalic junction dysplasia Exudative retinopathy
2 genes
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1 of 2 corroborated by 2+ sources
PCDH12(5), RNF14(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 288 →
Distal muscular dystrophy Multiminicore myopathy
2 genes
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2 of 2 corroborated by 2+ sources
MYH7(2), TTN(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Epidermal nevus Seminoma
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(3), HRAS(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 18 →
Bouillaud’s disease Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Skeletal system disease
2 genes
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0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Central nervous system non-hodgkin lymphoma Wheat allergic reaction
2 genes
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0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Central nervous system non-hodgkin lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 1 →
Chromosome 3p25 monosomy Tubular aggregate myopathy
2 genes
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2 of 2 corroborated by 2+ sources
OXTR(2), CAV3(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 217 →
Klippel-trenaunay syndrome Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 40 →
Ataxia with vitamin e deficiency Hypoalphalipoproteinemia
2 genes
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2 of 2 corroborated by 2+ sources
APOA1(5), APOB(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 140 →
Hematoma Intracranial vasospasm
2 genes
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2 of 2 corroborated by 2+ sources
S100B(2), PLAT(2)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Hemimegalencephaly overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes
2 genes
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2 of 2 corroborated by 2+ sources
AKT3(3), MTOR(3)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. —
Hereditary hemorrhagic telangiectasia Parkes weber syndrome
2 genes
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1 of 2 corroborated by 2+ sources
RASA1(4), CCNH(1)
0.222 0.667 5.31e-7 3.27e-6 ✓ sig. Cluster 40 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.