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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Brain disease Cognition disorder
5 genes
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5 of 5 corroborated by 2+ sources
APP(2), CDK5R1(2), SLC1A1(2), TSC1(2), OTC(2)
0.054 0.119 3.38e-7 2.16e-6 ✓ sig. Cluster 351 →
Hypotension Panic disorder
5 genes
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5 of 5 corroborated by 2+ sources
INS(2), CRH(2), MAOA(2), ADORA2A(2), ADRA2A(2)
0.052 0.147 3.38e-7 2.16e-6 ✓ sig. —
Kidney cancer Lipoma
4 genes
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TERT(1), EXO1(1), STN1(1), ACTRT3(1)
0.044 0.333 3.41e-7 2.18e-6 ✓ sig. —
Craniosynostosis Loeys-dietz syndrome
4 genes
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2 of 4 corroborated by 2+ sources
FBN1(1), FBN2(1), TGFBR1(6), SMAD6(4)
0.056 0.250 3.42e-7 2.19e-6 ✓ sig. —
Nonmedullary thyroid cancer Thyroid cancer
3 genes
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3 of 3 corroborated by 2+ sources
FOXE1(4), HABP2(3), MINPP1(2)
0.077 0.429 3.42e-7 2.19e-6 ✓ sig. —
Night blindness, congenital stationary Retinal degeneration
4 genes
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4 of 4 corroborated by 2+ sources
PDE6B(3), RHO(3), GNAT1(4), RPGR(2)
0.068 0.160 3.44e-7 2.20e-6 ✓ sig. —
Myasthenia gravis Oropharyngeal cancer
5 genes
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4 of 5 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), HLA-DQB1(2), CTLA4(1), HLA-B(2)
0.053 0.132 3.45e-7 2.20e-6 ✓ sig. —
Eosinophilia Nasal polyp
6 genes
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4 of 6 corroborated by 2+ sources
HLA-DQA1(3), HLA-DRB1(3), CLEC16A(1), GATA3(3), TSLP(3), WDR36(1)
0.041 0.154 3.47e-7 2.22e-6 ✓ sig. —
Gastrointestinal stromal tumor Medulloblastoma
5 genes
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4 of 5 corroborated by 2+ sources
SMO(2), PTCH1(1), PDGFRA(4), SUFU(5), PTCH2(3)
0.054 0.106 3.67e-7 2.34e-6 ✓ sig. —
Ciliopathy Congenital cystic kidney disease
3 genes
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3 of 3 corroborated by 2+ sources
TMEM231(3), B9D1(3), TXNDC15(3)
0.041 0.750 3.75e-7 2.39e-6 ✓ sig. Cluster 8 →
Bouillaud’s disease Cold paroxysmal hemoglobinuria
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Congenital hyperinsulinism Dend syndrome
2 genes
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2 of 2 corroborated by 2+ sources
ABCC8(3), KCNJ11(5)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Congenital insensitivity to pain Episodic pain syndrome
2 genes
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2 of 2 corroborated by 2+ sources
SCN10A(5), SCN11A(4)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 164 →
Bouillaud’s disease Diabetic nephropathy type 1
2 genes
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2 of 2 corroborated by 2+ sources
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Bruxism Cyclin-dependent kinase-like 5 deficiency
2 genes
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CDKL5(1), MECP2(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 61 →
Bulbar palsy Cyclin-dependent kinase-like 5 deficiency
2 genes
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CACNA1A(1), MECP2(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 61 →
Cadasil Retinal vasculopathy with cerebral leukodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
TREX1(3), ATRIP(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 150 →
Cadasil Cerebral arteriopathy with subcortical infarcts and leukoencephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
NOTCH3(7), HTRA1(6)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Bouillaud’s disease Paroxysmal nocturnal hemoglobinuria
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Pelizaeus-merzbacher disease Spastic paraplegia, x-linked
2 genes
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1 of 2 corroborated by 2+ sources
PLP1(8), RAB9B(1)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Polycythemia, primary familial and congenital Thrombocythemia
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(4), JAK2(5)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Polycythemia, primary familial and congenital Thrombocytosis
2 genes
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2 of 2 corroborated by 2+ sources
SH2B3(2), JAK2(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Bouillaud’s disease Hemoglobinuria paroxysmal
2 genes
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0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 1 →
Hypocalcemia Hypocalciuric hypercalcemia
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(7), CASR(7)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. —
Hypocalcemic vitamin d-dependent rickets Rickets
2 genes
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2 of 2 corroborated by 2+ sources
VDR(3), CYP27B1(3)
0.250 0.667 3.80e-7 2.39e-6 ✓ sig. Cluster 396 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.