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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Long qt syndrome, digenic Torsades de pointes
2 genes
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2 of 2 corroborated by 2+ sources
KCNH2(2), SCN5A(2)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. —
Malpuech facial clefting syndrome Oculopalatosekeletal syndrome
2 genes
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1 of 2 corroborated by 2+ sources
COLEC11(1), MASP1(2)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 353 →
Episodic kinesigenic dyskinesia Paroxysmal dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(6), KCNA1(2)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 58 →
Estrogen resistance Male breast carcinoma
2 genes
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2 of 2 corroborated by 2+ sources
ESR1(6), CCDC170(2)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. —
familial sleep-related hypermotor epilepsy Frontal lobe epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
CHRNB2(3), CHRNA4(3)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 273 →
Paroxysmal familial ventricular fibrillation Right ventricular cardiomyopathy
2 genes
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DSP(1), LMNA(1)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. —
Bone osteosarcoma Li-fraumeni syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHEK2(5), TP53(7)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 3 →
Carnevale syndrome Oculopalatosekeletal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 353 →
Caudal regression syndrome Neural tube defects, susceptibility to
2 genes
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2 of 2 corroborated by 2+ sources
FUZ(4), VANGL1(4)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 94 →
Chilblain lupus erythematosus Retinal vasculopathy with cerebral leukodystrophy
2 genes
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1 of 2 corroborated by 2+ sources
TREX1(5), ATRIP(1)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 150 →
3mc syndrome Oculopalatosekeletal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(3), MASP1(4)
0.286 0.667 2.53e-7 1.65e-6 ✓ sig. Cluster 353 →
Anhedonia Hyperkinesia
4 genes
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4 of 4 corroborated by 2+ sources
DISC1(2), DRD2(2), SLC6A3(2), CRHR1(2)
0.071 0.154 2.53e-7 1.65e-6 ✓ sig. —
Autoinflammatory syndrome Cold autoinflammatory syndrome
3 genes
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3 of 3 corroborated by 2+ sources
NLRP3(5), NLRP12(4), NLRC4(3)
0.073 0.500 2.54e-7 1.66e-6 ✓ sig. —
Auditory neuropathy Pendred syndrome
3 genes
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OTOF(1), DIAPH1(1), MYO7A(1)
0.083 0.429 2.57e-7 1.68e-6 ✓ sig. —
Central nervous system non-hodgkin lymphoma Membranous glomerulonephritis
3 genes
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2 of 3 corroborated by 2+ sources
HLA-DQA1(2), HLA-DRB1(2), IRF4(1)
0.083 0.429 2.57e-7 1.68e-6 ✓ sig. Cluster 1 →
Beta thalassemia Iron deficiency anemia
3 genes
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1 of 3 corroborated by 2+ sources
HFE(1), TNF(1), TFRC(2)
0.103 0.300 2.61e-7 1.70e-6 ✓ sig. —
Beta thalassemia Spherocytosis
3 genes
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3 of 3 corroborated by 2+ sources
CAD(2), UMPS(2), DHODH(2)
0.103 0.300 2.61e-7 1.70e-6 ✓ sig. —
Rhabdomyosarcoma Wilms tumor
4 genes
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2 of 4 corroborated by 2+ sources
ARID1A(1), IGF2(3), BCOR(1), DICER1(3)
0.071 0.148 2.61e-7 1.70e-6 ✓ sig. —
inherited retinal dystrophy Oguchi disease
3 genes
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3 of 3 corroborated by 2+ sources
PDE6B(2), GNAT1(2), SLC24A1(2)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. Cluster 151 →
Anophthalmia Coloboma
3 genes
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2 of 3 corroborated by 2+ sources
ELP4(1), PAX6(4), RAX(3)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. —
Granulomatosis with polyangiitis Systemic scleroderma
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DPB1(3), FCGR3B(2), HLA-DPA1(3)
0.111 0.214 2.70e-7 1.76e-6 ✓ sig. —
Hereditary spastic paraplegia Spastic paraplegia, x-linked
3 genes
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1 of 3 corroborated by 2+ sources
SPAST(1), PLP1(3), RAB9B(1)
0.029 1.000 2.74e-7 1.78e-6 ✓ sig. —
Aortic arch syndrome Dermatitis
3 genes
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3 of 3 corroborated by 2+ sources
HLA-DRB1(2), HLA-B(2), HLA-A(2)
0.071 0.500 2.76e-7 1.80e-6 ✓ sig. —
Brain neoplasms Diabetes microvascular complications
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), PON1(2), SOD2(3)
0.071 0.500 2.76e-7 1.80e-6 ✓ sig. —
Blood coagulation disorder Disseminated intravascular coagulation
3 genes
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3 of 3 corroborated by 2+ sources
F2(3), SERPINC1(2), PROC(3)
0.097 0.333 2.78e-7 1.81e-6 ✓ sig. Cluster 55 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.