Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Osteonecrosis of medial femoral condyle Thromboembolism
3 genes
Show details
3 of 3 corroborated by 2+ sources
F2(2), PLAT(2), F5(2)
0.125 0.250 1.31e-7 9.01e-7 ✓ sig. —
Eye neoplasms Sebaceous gland disease
3 genes
Show details
HERC2(1), IRF4(1), TYR(1)
0.125 0.250 1.31e-7 9.01e-7 ✓ sig. —
Optic neuritis Senile cataract
3 genes
Show details
CAT(1), GSTT1(1), GSTM1(1)
0.125 0.231 1.34e-7 9.20e-7 ✓ sig. —
Cataplexy and narcolepsy Narcolepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
P2RY11(3), PPAN(2), PPAN-P2RY11(2)
0.057 0.750 1.37e-7 9.38e-7 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Narcolepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
0.057 0.750 1.37e-7 9.38e-7 ✓ sig. Cluster 1 →
Generalized epilepsy Lennox-gastaut syndrome
4 genes
Show details
3 of 4 corroborated by 2+ sources
CACNA1A(2), CUX2(3), SCN1A(4), POLG(1)
0.054 0.333 1.40e-7 9.58e-7 ✓ sig. —
Double outlet right ventricle Heterotaxy syndrome
3 genes
Show details
2 of 3 corroborated by 2+ sources
CFC1(5), CERS1(1), GDF1(2)
0.107 0.375 1.41e-7 9.69e-7 ✓ sig. —
Henoch schoenlein purpura Proteinuria
4 genes
Show details
4 of 4 corroborated by 2+ sources
AGT(2), HLA-DQA1(3), HLA-DRB1(2), IL1RN(2)
0.070 0.222 1.42e-7 9.76e-7 ✓ sig. —
Asbestosis Bronchopulmonary dysplasia
4 genes
Show details
3 of 4 corroborated by 2+ sources
GSTT1(2), IL1B(2), TNF(2), GSTM1(1)
0.068 0.235 1.47e-7 1.01e-6 ✓ sig. —
Arima syndrome Cystic kidney disease
3 genes
Show details
CC2D2A(1), CEP290(1), TMEM216(1)
0.097 0.429 1.49e-7 1.02e-6 ✓ sig. Cluster 8 →
Idiopathic pulmonary fibrosis Thyroid neoplasms
6 genes
Show details
6 of 6 corroborated by 2+ sources
TERT(4), TNF(2), PTGS2(2), HIF1A(2), ABCC10(2), BRD4(2)
0.049 0.130 1.50e-7 1.03e-6 ✓ sig. —
Oropharyngeal neoplasms Skeletal system disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Malnutrition Neural tube defects, folate-sensitive
2 genes
Show details
2 of 2 corroborated by 2+ sources
MTHFR(3), MTR(3)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 121 →
mismatch repair cancer syndrome 1 Turcot syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
PMS2(2), MLH1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 166 →
Muir-torre syndrome Turcot syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
PMS2(2), MLH1(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 166 →
Atypical hemolytic uremic syndrome Doyne honeycomb retinal dystrophy
2 genes
Show details
2 of 2 corroborated by 2+ sources
CFI(2), CFH(3)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 107 →
Autoimmune polyendocrine syndrome Skeletal system disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
autosomal recessive polycystic kidney disease Caroli disease
2 genes
Show details
2 of 2 corroborated by 2+ sources
PKD1(3), PKHD1(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 157 →
Autoimmune polyendocrine syndrome Benign mucous membrane pemphigoid
2 genes
Show details
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid Oropharyngeal neoplasms
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Benign mucous membrane pemphigoid with ocular involvement
2 genes
Show details
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid with ocular involvement Oropharyngeal neoplasms
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Wheat allergic reaction
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Wheat allergic reaction
2 genes
Show details
2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Congenital pain insensitivity Erythromelalgia
2 genes
Show details
2 of 2 corroborated by 2+ sources
SCN11A(2), SCN9A(5)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 164 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.