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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Congenital leukocyte adherence deficiency Leukocyte adhesion deficiency
2 genes
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2 of 2 corroborated by 2+ sources
FERMT3(7), ITGB2(6)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 155 →
Alopecia-intellectual disability syndrome Perniola krajewska carnevale syndrome
2 genes
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2 of 2 corroborated by 2+ sources
AHSG(2), LSS(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 362 →
Alpha thalassemia methemoglobinemia, alpha type
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Alpha thalassemia erythrocytosis, familial, 7
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Anastomosing haemangioma Congenital hemangioma
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(2), GNAQ(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 40 →
Apoceruloplasmin deficiency Ferroxidase deficiency
2 genes
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2 of 2 corroborated by 2+ sources
CP(3), SLC40A1(2)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 231 →
methemoglobinemia, alpha type Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
erythrocytosis, familial, 7 Unstable hemoglobin disease
2 genes
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2 of 2 corroborated by 2+ sources
HBA1(3), HBA2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 72 →
Keratitis-ichthyosis-deafness syndrome Senter syndrome
2 genes
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1 of 2 corroborated by 2+ sources
GJB6(1), GJB2(3)
0.500 1.000 2.53e-8 1.93e-7 ✓ sig. Cluster 210 →
Osteosarcoma Ovarian neoplasms
8 genes
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2 of 8 corroborated by 2+ sources
TP53(2), EGFR(1), MECOM(2), MET(1), MYC(1), HDAC6(1), FOLR1(1), EZH2(1)
0.044 0.140 2.58e-8 1.96e-7 ✓ sig. —
Cyclocephaly Septopreoptic holoprosencephaly
3 genes
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3 of 3 corroborated by 2+ sources
FGF8(2), GAS1(2), ZIC2(2)
0.150 0.429 2.61e-8 1.99e-7 ✓ sig. —
Cyclocephaly Syntelencephaly
3 genes
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3 of 3 corroborated by 2+ sources
FGF8(2), GAS1(2), ZIC2(2)
0.150 0.429 2.61e-8 1.99e-7 ✓ sig. —
C3 glomerulonephritis Macular and posterior pole degeneration
3 genes
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3 of 3 corroborated by 2+ sources
CFI(3), C3(3), CFH(4)
0.158 0.375 2.63e-8 2.00e-7 ✓ sig. —
Rolandic epilepsy Unverricht-lundborg syndrome
3 genes
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3 of 3 corroborated by 2+ sources
SCARB2(2), PRICKLE1(2), CSTB(5)
0.063 1.000 2.67e-8 2.03e-7 ✓ sig. —
Anhedonia Cognition disorder
5 genes
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5 of 5 corroborated by 2+ sources
COMT(2), CRH(2), DRD2(2), SLC6A4(2), CACNA1C(2)
0.066 0.192 2.73e-8 2.07e-7 ✓ sig. —
Autoinflammatory syndrome Lymphoproliferative syndrome
4 genes
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4 of 4 corroborated by 2+ sources
XIAP(3), ITK(5), CD27(4), SH2D1A(3)
0.083 0.286 2.78e-8 2.11e-7 ✓ sig. —
Malnutrition Neural tube defect
3 genes
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3 of 3 corroborated by 2+ sources
MTHFR(2), CBS(2), MTR(2)
0.061 1.000 2.84e-8 2.16e-7 ✓ sig. —
Congenital clubfoot Congenital hemivertebra
3 genes
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BLTP1(1), PKD1(1), INPP5E(1)
0.115 0.600 2.91e-8 2.20e-7 ✓ sig. —
Sleep apnea Sleep disorder
4 genes
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BTBD9(1), SLC39A8(1), MEIS1(1), BFSP1(1)
0.070 0.364 2.94e-8 2.23e-7 ✓ sig. —
autosomal recessive primary microcephaly Congenital microcephaly
3 genes
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3 of 3 corroborated by 2+ sources
ASPM(2), CDK5RAP2(2), STIL(2)
0.091 0.750 2.95e-8 2.24e-7 ✓ sig. —
Bone fragility with contractures, arterial rupture, and deafness Cole-carpenter syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CRTAP(3), P4HB(6), SEC24D(6)
0.060 1.000 3.03e-8 2.29e-7 ✓ sig. Cluster 68 →
Cole-carpenter syndrome Osteoporosis-pseudoglioma syndrome
3 genes
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3 of 3 corroborated by 2+ sources
CRTAP(3), P4HB(6), SEC24D(6)
0.060 1.000 3.03e-8 2.29e-7 ✓ sig. Cluster 68 →
Disseminated intravascular coagulation Thromboembolism
3 genes
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3 of 3 corroborated by 2+ sources
F2(2), PROC(2), F7(2)
0.158 0.333 3.03e-8 2.29e-7 ✓ sig. Cluster 55 →
Cleft palate Uranostaphyloschisis
5 genes
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2 of 5 corroborated by 2+ sources
MEIS2(1), TBX22(1), IRF6(2), SATB2(2), ARHGAP29(1)
0.063 0.208 3.04e-8 2.30e-7 ✓ sig. —
Cleft palate and bilateral cleft lip Developmental delay
4 genes
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ND2(1), COX3(1), ND5(1), ND4(1)
0.082 0.286 3.10e-8 2.35e-7 ✓ sig. Cluster 32 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.