Disease Clusters?
Groups of diseases that share a large number of curated genes with each other, computed via label propagation over the shared-gene similarity graph. See also Shared-Gene Disease Pairs for pairwise comparisons.
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Cluster 20
20
Diseases
519
Unique genes
0.146
Avg. similarity score
Nonsyndromic hearing loss
Most-connected disease (14 links)
Disease
Searched: Hearing loss
Pinned (dragged)
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Hearing loss
Nonsyndromic hearing loss
Deafness
Isolated sensorineural deafness
Hereditary hearing loss
nonsyndromic genetic hearing loss
Congenital ear anomaly
Usher syndrome
Meniere disease
Auditory neuropathy
Worster drought syndrome
autosomal recessive nonsyndromic hearing loss 102
autosomal recessive nonsyndromic hearing loss 63
hearing loss, autosomal recessive 120
Deafness-infertility syndrome
autosomal dominant nonsyndromic hearing loss
hearing loss, autosomal recessive 115
Cone rod dystrophy and hearing loss
Deafness dystonia syndrome
PDE6A-related retinopathy
Member diseases (most connected first ‐ the cluster's core)
| Disease ⇵ | Connections in cluster ⇵ | Significant partners ⇵ | Curated genes ⇵ |
|---|---|---|---|
| Nonsyndromic hearing loss | 14 | 14 | 118 |
| Deafness | 12 | 12 | 172 |
| Isolated sensorineural deafness | 12 | 12 | 119 |
| Hereditary hearing loss | 11 | 11 | 50 |
| Hearing loss | 9 | 9 | 387 |
| nonsyndromic genetic hearing loss | 9 | 9 | 82 |
| Congenital ear anomaly | 8 | 8 | 31 |
| Usher syndrome | 6 | 6 | 44 |
| Meniere disease | 5 | 5 | 67 |
| Auditory neuropathy | 4 | 4 | 31 |
| Worster drought syndrome | 4 | 4 | 1 |
| autosomal recessive nonsyndromic hearing loss 102 | 4 | 4 | 1 |
| autosomal recessive nonsyndromic hearing loss 63 | 4 | 4 | 1 |
| hearing loss, autosomal recessive 120 | 4 | 4 | 1 |
| Deafness-infertility syndrome | 3 | 3 | 2 |
| autosomal dominant nonsyndromic hearing loss | 2 | 2 | 9 |
| hearing loss, autosomal recessive 115 | 2 | 2 | 1 |
| Cone rod dystrophy and hearing loss | 1 | 1 | 2 |
| Deafness dystonia syndrome | 1 | 1 | 1 |
| PDE6A-related retinopathy | 1 | 1 | 1 |
Top shared genes (genes linked to 2+ member diseases ‐ top 100 shown, download for all)
| Gene ⇵ | Member diseases ⇵ | Linked diseases |
|---|---|---|
| MYO7A | 10 / 20 | Auditory neuropathy, Congenital ear anomaly, Deafness, Hearing loss and 6 more |
| CDH23 | 9 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 5 more |
| PCDH15 | 9 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 5 more |
| MYO6 | 8 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 4 more |
| OTOF | 8 / 20 | Auditory neuropathy, Congenital ear anomaly, Deafness, Hearing loss and 4 more |
| TECTA | 8 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 4 more |
| USH1C | 8 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 4 more |
| WFS1 | 8 / 20 | Auditory neuropathy, Deafness, Hearing loss, Hereditary hearing loss and 4 more |
| COCH | 7 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| COL11A2 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| ESPN | 7 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| GJB2 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| LHFPL5 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| MARVELD2 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| MYH14 | 7 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| MYO15A | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| OTOA | 7 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| PJVK | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| STRC | 7 / 20 | Deafness, Deafness-infertility syndrome, Hearing loss, Hereditary hearing loss and 3 more |
| TMC1 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| TMIE | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| TMPRSS3 | 7 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 3 more |
| WHRN | 7 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 3 more |
| ACTG1 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| ATP11A | 6 / 20 | Auditory neuropathy, autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss and 2 more |
| CDC14A | 6 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| CEACAM16 | 6 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| CIB2 | 6 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 2 more |
| CLDN14 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| COL11A1 | 6 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| ESRRB | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| EYA4 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| GRHL2 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| GSDME | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| HGF | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| KCNQ4 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| LOXHD1 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| LRTOMT | 6 / 20 | autosomal recessive nonsyndromic hearing loss 63, Deafness, Hearing loss, Hereditary hearing loss and 2 more |
| MYH9 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| MYO3A | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| OTOG | 6 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| OTOGL | 6 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| POU4F3 | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| RDX | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| RIPOR2 | 6 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| SERPINB6 | 6 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 2 more |
| SLC17A8 | 6 / 20 | Auditory neuropathy, Deafness, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| SLC26A4 | 6 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Hereditary hearing loss and 2 more |
| TBC1D24 | 6 / 20 | Auditory neuropathy, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| TNC | 6 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 2 more |
| TPRN | 6 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 2 more |
| TRIOBP | 6 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 2 more |
| ABCC1 | 5 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| ADCY1 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ADGRV1 | 5 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 1 more |
| ATP2B2 | 5 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| C10ORF105 | 5 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 1 more |
| CABP2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| CCDC50 | 5 / 20 | Deafness, Hereditary hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| CLRN2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DCDC2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DIABLO | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| DIAPH1 | 5 / 20 | Auditory neuropathy, Deafness, Hearing loss, Hereditary hearing loss and 1 more |
| DMXL2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ELMOD3 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| EPS8 | 5 / 20 | autosomal recessive nonsyndromic hearing loss 102, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| EPS8L2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Meniere disease and 1 more |
| GIPC3 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| GJB3 | 5 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| GJB6 | 5 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| GRXCR1 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| GRXCR2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| ILDR1 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| KARS1 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| LMX1A | 5 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| MET | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| MINAR2 | 5 / 20 | Deafness, Hearing loss, hearing loss, autosomal recessive 120, Isolated sensorineural deafness and 1 more |
| MSRB3 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| PDE1C | 5 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| PLS1 | 5 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| PTPRQ | 5 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Isolated sensorineural deafness and 1 more |
| S1PR2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SIX1 | 5 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Isolated sensorineural deafness and 1 more |
| SLC26A5 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SLC44A4 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| SYNE4 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| TBCEL-TECTA | 5 / 20 | Congenital ear anomaly, Deafness, Hearing loss, Meniere disease and 1 more |
| TJP2 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss and 1 more |
| TMTC4 | 5 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss and 1 more |
| AFG2B | 4 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| BDP1 | 4 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss |
| CD164 | 4 / 20 | autosomal dominant nonsyndromic hearing loss, Deafness, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| CLIC5 | 4 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| CRYM | 4 / 20 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
| DIAPH3 | 4 / 20 | Auditory neuropathy, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| FOXI1 | 4 / 20 | Deafness, Hearing loss, Hereditary hearing loss, Nonsyndromic hearing loss |
| GPR156 | 4 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, Nonsyndromic hearing loss |
| GRAP | 4 / 20 | Deafness, Hearing loss, Isolated sensorineural deafness, nonsyndromic genetic hearing loss |
| HOMER2 | 4 / 20 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
| KITLG | 4 / 20 | Deafness, Isolated sensorineural deafness, nonsyndromic genetic hearing loss, Nonsyndromic hearing loss |
What do these columns mean?
- Connections in cluster
- How many other members this disease has a shared-gene link to (the node size in the network above). The most-connected diseases are the cluster's core.
- Significant partners
- How many of those links are statistically significant (FDR q < 0.05).
- Curated genes
- Distinct curated genes linked to that disease in GeDiPNet.
- Member diseases (Top shared genes)
- How many of this cluster's diseases are linked to the gene, out of the cluster's total. Genes shared by many members are the most direct explanation of why they group together.
- Overlap genes (x / y)
- x = genes shared between this cluster and the pathway/GO term; y = that pathway/GO term's total gene count. A higher x relative to y (and to the cluster's own size) means a tighter biological match.
- Cluster gene count
- Total distinct genes across every disease in this cluster -- the "n" used in the significance test below.
- Fold enrichment
- Observed overlap divided by the overlap expected by chance, given the cluster's gene count, the pathway/term's size and the gene universe tested. 5× means five times more shared genes than random. Tells strong hits apart when q-values are all vanishingly small.
- P-value / FDR q-value
- Is this pathway/GO term's overlap with the cluster more than chance? Upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pathway/term (prefer the q-value -- it accounts for testing many at once).
- Shared genes (Pairs within this cluster)
- Number of curated genes the two diseases in that row have in common.
- Similarity score (Pairs within this cluster)
- Jaccard-based gene overlap between the two specific diseases in that row -- same metric as the main Shared-Gene Disease Pairs page.
Enriched Pathways (why this cluster is grouped, biologically)
| Pathway ⇵ | Source ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| Cohesin Loading onto Chromatin | Reactome | 2 / 10 | 48.0× | 7.48e-4 | 1.12e-2 ✓ sig. |
| Synthesis of Prostaglandins (PG) and Thromboxanes (TX) | Reactome | 2 / 12 | 40.0× | 1.09e-3 | 1.48e-2 ✓ sig. |
| Retinoid cycle disease events | Reactome | 2 / 13 | 37.0× | 1.29e-3 | 1.68e-2 ✓ sig. |
| Aminoacyl-tRNA biosynthesis | KEGG | 3 / 66 | 10.9× | 2.58e-3 | 2.82e-2 ✓ sig. |
| The canonical retinoid cycle in rods (twilight vision) | Reactome | 2 / 20 | 24.0× | 3.08e-3 | 3.18e-2 ✓ sig. |
| Mtb iron assimilation by chelation | Reactome | 1 / 1 | 240× | 4.16e-3 | 3.93e-2 ✓ sig. |
| Biosynthesis of EPA-derived SPMs | Reactome | 1 / 1 | 240× | 4.16e-3 | 3.93e-2 ✓ sig. |
| Biosynthesis of DPAn-3 SPMs | Reactome | 1 / 1 | 240× | 4.16e-3 | 3.93e-2 ✓ sig. |
| Retinoid metabolism disease events | Reactome | 1 / 1 | 240× | 4.16e-3 | 3.93e-2 ✓ sig. |
| Biosynthesis of electrophilic ω-3 PUFA oxo-derivatives | Reactome | 1 / 2 | 120× | 8.31e-3 | 6.23e-2 |
| ARL13B-mediated ciliary trafficking of INPP5E | Reactome | 1 / 3 | 80.1× | 1.24e-2 | 8.00e-2 |
| Biosynthesis of DHA-derived SPMs | Reactome | 1 / 3 | 80.1× | 1.24e-2 | 8.00e-2 |
| Retinoid metabolism and transport | Reactome | 2 / 41 | 11.7× | 1.26e-2 | 8.07e-2 |
| Biosynthesis of protectins | Reactome | 1 / 4 | 60.1× | 1.66e-2 | 9.50e-2 |
| Ovarian steroidogenesis | KEGG | 2 / 52 | 9.2× | 1.97e-2 | 1.05e-1 |
Enriched GO Terms (Biological Process, a second line of biological evidence)
| GO term ⇵ | GO ID ⇵ | Overlap genes ⇵ | Fold enrichment ⇵ | P-value ⇵ | FDR q-value ⇵ |
|---|---|---|---|---|---|
| embryonic hindlimb morphogenesis | GO:0035116 | 5 / 29 | 64.4× | 1.26e-8 | 2.06e-6 ✓ sig. |
| tRNA aminoacylation | GO:0043039 | 3 / 13 | 86.2× | 5.06e-6 | 3.09e-4 ✓ sig. |
| response to hypoxia | GO:0001666 | 6 / 176 | 12.7× | 7.22e-6 | 4.11e-4 ✓ sig. |
| alanyl-tRNA aminoacylation | GO:0006419 | 2 / 3 | 249× | 2.10e-5 | 9.48e-4 ✓ sig. |
| heart morphogenesis | GO:0003007 | 4 / 61 | 24.5× | 2.11e-5 | 9.52e-4 ✓ sig. |
| eye morphogenesis | GO:0048592 | 2 / 4 | 187× | 4.20e-5 | 1.61e-3 ✓ sig. |
| metanephric ascending thin limb development | GO:0072218 | 2 / 4 | 187× | 4.20e-5 | 1.61e-3 ✓ sig. |
| kidney development | GO:0001822 | 5 / 146 | 12.8× | 4.34e-5 | 1.65e-3 ✓ sig. |
| skeletal system development | GO:0001501 | 5 / 151 | 12.4× | 5.10e-5 | 1.86e-3 ✓ sig. |
| regulation of branching involved in prostate gland morphogenesis | GO:0060687 | 2 / 5 | 149× | 6.98e-5 | 2.37e-3 ✓ sig. |
| regulation of blood pressure | GO:0008217 | 4 / 83 | 18.0× | 7.13e-5 | 2.40e-3 ✓ sig. |
| heart development | GO:0007507 | 6 / 273 | 8.2× | 8.53e-5 | 2.75e-3 ✓ sig. |
| embryonic forelimb morphogenesis | GO:0035115 | 3 / 33 | 34.0× | 9.29e-5 | 2.93e-3 ✓ sig. |
| cartilage development | GO:0051216 | 4 / 89 | 16.8× | 9.36e-5 | 2.95e-3 ✓ sig. |
| digestive tract development | GO:0048565 | 3 / 34 | 33.0× | 1.02e-4 | 3.13e-3 ✓ sig. |