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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Acrofacial dysostosis Weyers acrofacial dysostosis
2 genes
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2 of 2 corroborated by 2+ sources
EVC(3), EVC2(5)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 289 →
Acute disseminated encephalomyelitis Autoimmune polyendocrine syndrome
2 genes
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0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Congenital fusion of ribs Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
2 genes
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1 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 398 →
Autoimmune polyendocrine syndrome Wheat allergic reaction
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Oropharyngeal neoplasms Wheat allergic reaction
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Bladder cancer Seminoma
2 genes
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2 of 2 corroborated by 2+ sources
FGFR3(2), HRAS(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 18 →
Bladder cancer Schimmelpenning-feuerstein-mims syndrome
2 genes
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KRAS(1), HRAS(1)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 18 →
Budd-chiari syndrome Hepatic vein thrombosis
2 genes
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2 of 2 corroborated by 2+ sources
JAK2(4), F5(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 37 →
Carnevale syndrome Craniofacial ulnar renal syndrome
2 genes
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2 of 2 corroborated by 2+ sources
COLEC11(2), MASP1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 353 →
Atypical hemolytic uremic syndrome Doyne honeycomb retinal dystrophy
2 genes
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2 of 2 corroborated by 2+ sources
CFI(2), CFH(3)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 107 →
Autoimmune polyendocrine syndrome Skeletal system disease
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
autosomal recessive polycystic kidney disease Caroli disease
2 genes
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2 of 2 corroborated by 2+ sources
PKD1(3), PKHD1(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 157 →
Autoimmune polyendocrine syndrome Benign mucous membrane pemphigoid
2 genes
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0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Autoimmune polyendocrine syndrome Benign mucous membrane pemphigoid with ocular involvement
2 genes
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0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Benign mucous membrane pemphigoid with ocular involvement Oropharyngeal neoplasms
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Congenital pain insensitivity Erythromelalgia
2 genes
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2 of 2 corroborated by 2+ sources
SCN11A(2), SCN9A(5)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 164 →
Cystinuria Hypotonia-cystinuria syndrome
2 genes
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2 of 2 corroborated by 2+ sources
PREPL(2), SLC3A1(7)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. —
Oropharyngeal neoplasms Skeletal system disease
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Episodic kinesigenic dyskinesia Paroxysmal dystonic choreoathetosis
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(5), KCNA1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 58 →
Episodic kinesigenic dyskinesia Paroxysmal nonkinesigenic dyskinesia
2 genes
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2 of 2 corroborated by 2+ sources
PRRT2(6), KCNA1(2)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 58 →
Episodic pain syndrome Paroxysmal extreme pain disorder
2 genes
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2 of 2 corroborated by 2+ sources
SCN10A(5), SCN11A(4)
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 164 →
Bouillaud’s disease Esophageal achalasia
2 genes
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2 of 2 corroborated by 2+ sources
0.333 0.667 1.52e-7 1.03e-6 ✓ sig. Cluster 1 →
Arthrogryposis Distal arthrogryposis
3 genes
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3 of 3 corroborated by 2+ sources
ECEL1(5), MYH3(5), TPM2(5)
0.120 0.273 1.51e-7 1.03e-6 ✓ sig. Cluster 202 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.