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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hepatocellular carcinoma Polycystic ovary syndrome
26 genes
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24 of 26 corroborated by 2+ sources
AKR1C2(2), CSMD1(2), FST(2), YAP1(2), PPARG(2), RUNX3(2), RACGAP1(2), CYP1A1(2), ANLN(2), ASPM(2), CD274(2), AZGP1(3) +14 more
0.031 0.115 3.67e-6 1.95e-5 ✓ sig. Cluster 67 →
Cerebellar atrophy Periodic paralysis
2 genes
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ATP6(1), TBC1D24(1)
0.065 1.000 3.67e-6 1.95e-5 ✓ sig. —
Hypomyelinating leukodystrophy Tremor-ataxia-central hypomyelination syndrome
2 genes
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2 of 2 corroborated by 2+ sources
POLR3B(5), POLR3A(4)
0.065 1.000 3.67e-6 1.95e-5 ✓ sig. —
Clear cell renal cell carcinoma Urinary bladder cancer
5 genes
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TERT(1), CDKAL1(1), MAD1L1(1), MYNN(1), ACTRT3(1)
0.043 0.091 3.66e-6 1.95e-5 ✓ sig. —
Conotruncal cardiac defect Double outlet right ventricle
3 genes
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3 of 3 corroborated by 2+ sources
ZFPM2(2), NKX2-5(5), GDF1(2)
0.043 0.375 3.60e-6 1.92e-5 ✓ sig. —
Cutaneous mastocytosis Sickle cell anemia
3 genes
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2 of 3 corroborated by 2+ sources
HBE1(2), HBG2(2), OR51B5(1)
0.070 0.176 3.60e-6 1.92e-5 ✓ sig. Cluster 235 →
Gaucher disease Hereditary parkinson disease
3 genes
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3 of 3 corroborated by 2+ sources
SNCA(4), PSAP(7), GBA1(7)
0.070 0.176 3.60e-6 1.92e-5 ✓ sig. —
Calcium metabolism disorders Hypocalcemia
2 genes
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2 of 2 corroborated by 2+ sources
GNA11(6), CASR(7)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
Aortic arch syndrome Pemphigus
2 genes
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1 of 2 corroborated by 2+ sources
HLA-DRB1(2), IL2(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 1 →
C1 esterase inhibitor deficiency Complement pathway abnormality
2 genes
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C2(1), C4B(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
Posterior polar cataract Sutural cataract
2 genes
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2 of 2 corroborated by 2+ sources
MIP(3), CRYBA1(2)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 43 →
Cryptogenic west syndrome Tuberous sclerosis complex
2 genes
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2 of 2 corroborated by 2+ sources
TSC2(7), TSC1(7)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. —
Eyelid disease Visual impairment
2 genes
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EFEMP1(1), PNPT1(1)
0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 146 →
Cervical intraepithelial neoplasia Obstructive asthma
2 genes
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0.154 0.333 3.54e-6 1.89e-5 ✓ sig. Cluster 1 →
Eye neoplasms Uveal melanoma
3 genes
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HERC2(1), OCA2(1), IRF4(1)
0.060 0.250 3.52e-6 1.88e-5 ✓ sig. —
Kidney neoplasms Papilloma
3 genes
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SOD2(1), PTGS2(1), CCND1(1)
0.060 0.250 3.52e-6 1.88e-5 ✓ sig. —
Medulloblastoma Sarcoma
4 genes
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2 of 4 corroborated by 2+ sources
APC(2), FLI1(1), BRCA2(4), PRAME(1)
0.051 0.121 3.46e-6 1.85e-5 ✓ sig. —
Brain aneurysm Carotid atherosclerosis
3 genes
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LINGO2(1), CFDP1(1), EDNRA(1)
0.033 0.500 3.44e-6 1.84e-5 ✓ sig. —
Atrioventricular block Right ventricular cardiomyopathy
2 genes
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1 of 2 corroborated by 2+ sources
LMNA(3), TTN(1)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Cortical dysplasia with other brain malformations lissencephaly spectrum disorders
2 genes
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2 of 2 corroborated by 2+ sources
TUBG1(4), APC2(5)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. Cluster 176 →
Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome Micrognathism
2 genes
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1 of 2 corroborated by 2+ sources
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Desbuquois dysplasia Larsen syndrome
2 genes
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2 of 2 corroborated by 2+ sources
XYLT1(5), CANT1(5)
0.105 0.667 3.44e-6 1.84e-5 ✓ sig. —
Anhedonia Anorexia
3 genes
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3 of 3 corroborated by 2+ sources
CRH(2), CRHR1(2), CRHR2(2)
0.071 0.167 3.43e-6 1.83e-5 ✓ sig. —
Combined osteogenesis imperfecta and ehlers-danlos syndrome Heart valve prolapse
2 genes
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2 of 2 corroborated by 2+ sources
COL1A1(4), COL1A2(4)
0.067 1.000 3.42e-6 1.83e-5 ✓ sig. —
Cobblestone lissencephaly Macrogyria
2 genes
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2 of 2 corroborated by 2+ sources
LAMB1(5), TMTC3(2)
0.067 1.000 3.42e-6 1.83e-5 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.