Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Achondroplasia hypochondroplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
FGFR3(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Camptodactyly, tall stature, and hearing loss syndrome hypochondroplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
FGFR3(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Catshl syndrome hypochondroplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
FGFR3(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
Crouzon syndrome with acanthosis nigricans hypochondroplasia
1 gene
Show details
1 of 1 corroborated by 2+ sources
FGFR3(7)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
hypochondroplasia Muenke syndrome
1 gene
Show details
1 of 1 corroborated by 2+ sources
FGFR3(6)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 184 →
hypomagnesemia, seizures, and intellectual disability 1 Tetany
1 gene
Show details
1 of 1 corroborated by 2+ sources
CNNM2(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 341 →
Hypophosphatasia Micromelia
1 gene
Show details
1 of 1 corroborated by 2+ sources
ALPL(3)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 363 →
inherited retinal dystrophy Nanophthalmos
2 genes
Show details
2 of 2 corroborated by 2+ sources
CRB1(2), C1QTNF5(2)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Blindness Optic neuritis
2 genes
Show details
1 of 2 corroborated by 2+ sources
EFEMP1(2), AQP4(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Bronchial hyperreactivity Congestive ophthalmopathy
2 genes
Show details
2 of 2 corroborated by 2+ sources
ICAM1(2), IL1RN(2)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Byzanthine arch palate Congenital epicanthus
2 genes
Show details
TFAP2A(1), PTK2(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Angle closure glaucoma Carotid artery stenosis
2 genes
Show details
1 of 2 corroborated by 2+ sources
APOE(2), MTHFR(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Essential thrombocythemia Nephrosclerosis
2 genes
Show details
2 of 2 corroborated by 2+ sources
TGFB1(2), FGF2(2)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Bicuspid aortic valve Neuropathy, ataxia, and retinitis pigmentosa
2 genes
Show details
1 of 2 corroborated by 2+ sources
ATP6(2), ATP8(1)
0.077 0.154 5.95e-5 2.33e-4 ✓ sig. —
Cystitis Tonic-clonic epilepsy
2 genes
Show details
2 of 2 corroborated by 2+ sources
NGF(2), POMC(2)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Cushing's disease Gliosarcoma
2 genes
Show details
2 of 2 corroborated by 2+ sources
TP53(2), PPARG(2)
0.077 0.182 5.54e-5 2.33e-4 ✓ sig. —
Paralysis Tremor
2 genes
Show details
1 of 2 corroborated by 2+ sources
SCN4A(2), ATP7A(1)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Intervertebral disc disease Uremia
2 genes
Show details
2 of 2 corroborated by 2+ sources
TGFB1(2), SPARC(2)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. Cluster 180 →
Dwarfism Seckel syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
TRAIP(5), PLK4(4)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Prostatic intraepithelial neoplasia Substance-induced psychosis
2 genes
Show details
ESR1(1), GSTP1(1)
0.074 0.182 6.27e-5 2.33e-4 ✓ sig. —
Carcinogenesis Endometrial hyperplasia
2 genes
Show details
2 of 2 corroborated by 2+ sources
KRAS(2), CDKN2A(2)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. Cluster 3 →
Gaucher disease Retinitis pigmentosa-deafness syndrome
2 genes
Show details
1 of 2 corroborated by 2+ sources
PSAP(7), CDH23(1)
0.074 0.182 6.27e-5 2.33e-4 ✓ sig. Cluster 118 →
Clinodactyly Esotropia
2 genes
Show details
ANKRD11(1), FASN(1)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Hypertensive heart disease Potassium deficiency
2 genes
Show details
FGF5(1), PRDM8(1)
0.074 0.200 5.78e-5 2.33e-4 ✓ sig. —
Brain edema Down syndrome
2 genes
Show details
2 of 2 corroborated by 2+ sources
S100B(2), MMP9(2)
0.071 0.200 6.45e-5 2.33e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.