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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Coronary artery dissection Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FBN1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
silver-russell syndrome 5 Well-differentiated liposarcoma
1 gene
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1 of 1 corroborated by 2+ sources
HMGA2(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 342 →
Skeletal system disease Skeletal system disorder
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Smith-magenis syndrome syndromic X-linked intellectual disability Snyder type
1 gene
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1 of 1 corroborated by 2+ sources
SMS(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 347 →
Cardiac tamponade Spinal cord compression
1 gene
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1 of 1 corroborated by 2+ sources
PLAT(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Spinocerebellar ataxia, x-linked X-linked non progressive cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
ATP2B3(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Seminoma Splenic neoplasms
1 gene
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HRAS(1)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 18 →
Coronal craniosynostosis Sweeney-cox syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 127 →
Saethre-chotzen syndrome Sweeney-cox syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Synpolydactyly Zygodactyly
1 gene
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1 of 1 corroborated by 2+ sources
HOXD13(5)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 397 →
T-B+ severe combined immunodeficiency due to gamma chain deficiency X-linked combined immunodeficiency diseases
1 gene
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1 of 1 corroborated by 2+ sources
IL2RG(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Coronal craniosynostosis TCF12-related craniosynostosis
1 gene
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1 of 1 corroborated by 2+ sources
TCF12(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 127 →
Temple-baraitser syndrome Zimmermann-laband syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Growth retardation, mild developmental delay, chronic hepatitis syndrome Polycythemia, primary familial and congenital
1 gene
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1 of 1 corroborated by 2+ sources
SH2B3(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hairy cell leukemia Ventricular hypertrophy
1 gene
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1 of 1 corroborated by 2+ sources
BRAF(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
hartnup disease Hyperglycinuria
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A19(2)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hartsfield-Bixler-Demyer syndrome Pfeiffer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(7)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. —
Hartsfield-Bixler-Demyer syndrome Trigonocephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGFR1(4)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 185 →
Alpha thalassemia HBA1-related alpha thalassemia spectrum
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA1-related alpha thalassemia spectrum Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA1-related alpha thalassemia spectrum Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
HBA1(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
Alpha thalassemia HBA2-related alpha thalassemia spectrum
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA2-related alpha thalassemia spectrum Hemoglobin barts fetalis syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(3)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
HBA2-related alpha thalassemia spectrum Hemoglobin h disease
1 gene
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1 of 1 corroborated by 2+ sources
HBA2(6)
0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 72 →
Benign mucous membrane pemphigoid with ocular involvement Heerfordt syndrome
1 gene
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0.250 1.000 1.95e-4 5.35e-4 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.