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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
CYP1B1-related glaucoma with or without anterior segment dysgenesis Primary congenital glaucoma
1 gene
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1 of 1 corroborated by 2+ sources
CYP1B1(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Anaplastic oligoastrocytoma D-2-hydroxyglutaric aciduria
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
D-2-hydroxyglutaric aciduria Gemistocytic astrocytoma
1 gene
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1 of 1 corroborated by 2+ sources
IDH2(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
D-bifunctional protein deficiency Peroxisomal disorder
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B4(5)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 99 →
Dacryocystitis Multifocal osteomyelitis
1 gene
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IL1RN(1)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 216 →
Deaf blind hypopigmentation syndrome Waardenburg-shah syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SOX10(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Deafness with congenital heart defects and posterior embryotoxon Middle aortic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
JAG1(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Deafness-lymphedema-leukemia syndrome Primary graft dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 136 →
Delta zero thalassemia Delta-beta thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Delta-sarcoglycan-related limb-girdle muscular dystrophy r6 Salivary gland disease
1 gene
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1 of 1 corroborated by 2+ sources
SGCD(2)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Delta-beta thalassemia Delta-thalassemia
1 gene
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1 of 1 corroborated by 2+ sources
HBD(3)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. —
Dermatopathia pigmentosa reticularis Weber-cockayne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KRT14(6)
0.200 1.000 2.60e-4 6.51e-4 ✓ sig. Cluster 269 →
B-lymphoblastic leukemia/lymphoma Burkitt lymphoma
2 genes
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2 of 2 corroborated by 2+ sources
TCF3(2), PBX1(2)
0.054 0.105 2.44e-4 6.51e-4 ✓ sig. —
Cleft lip and palate Uranostaphyloschisis
2 genes
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IRF6(1), ARHGAP29(1)
0.053 0.133 2.41e-4 6.51e-4 ✓ sig. —
Epithelial ovarian carcinoma Optic neuritis
2 genes
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2 of 2 corroborated by 2+ sources
GSTT1(2), GSTM1(2)
0.050 0.154 2.46e-4 6.51e-4 ✓ sig. —
Dry eye syndrome Uveitis
3 genes
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1 of 3 corroborated by 2+ sources
IL1B(1), IL6(1), TGFB1(2)
0.034 0.091 2.43e-4 6.51e-4 ✓ sig. —
Epithelial ovarian carcinoma Hirschsprung disease
3 genes
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3 of 3 corroborated by 2+ sources
GSTT1(2), GSTM1(2), ERBB2(4)
0.032 0.107 2.39e-4 6.51e-4 ✓ sig. —
Bile acid malabsorption Cholelithiasis
2 genes
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1 of 2 corroborated by 2+ sources
RASL12(1), SLC51B(4)
0.014 0.667 2.41e-4 6.51e-4 ✓ sig. —
Non-specific syndromic intellectual disability Tessadori-van haaften neurodevelopmental syndrome
3 genes
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3 of 3 corroborated by 2+ sources
H4C3(5), H4C5(6), H4C9(5)
0.008 0.500 2.57e-4 6.51e-4 ✓ sig. —
Emphysema Keratosis
2 genes
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2 of 2 corroborated by 2+ sources
TP53(2), NFE2L2(2)
0.044 0.200 2.36e-4 6.48e-4 ✓ sig. —
Generalized anxiety disorder Retinal detachment
3 genes
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1 of 3 corroborated by 2+ sources
FRAS1(1), MAPT(1), EYS(2)
0.036 0.075 2.28e-4 6.25e-4 ✓ sig. —
Osteolysis Otosclerosis
2 genes
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2 of 2 corroborated by 2+ sources
SPP1(2), TNFSF11(2)
0.035 0.286 2.23e-4 6.13e-4 ✓ sig. —
Benign prostatic hyperplasia Head and neck cancer
2 genes
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TERT(1), CLPTM1L(1)
0.045 0.200 2.23e-4 6.12e-4 ✓ sig. —
Erectile dysfunction Lipoprotein lipase deficiency
3 genes
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1 of 3 corroborated by 2+ sources
SLC39A8(1), VEGFA(3), TDRD15(1)
0.034 0.100 2.23e-4 6.10e-4 ✓ sig. —
Aortic stenosis Major salivary gland carcinoma
2 genes
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MYMK(1), SLC2A6(1)
0.031 0.333 2.22e-4 6.08e-4 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.