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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dravet syndrome familial hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
SCN1A(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Familial telangiectasia cancer syndrome Urologic neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
ATR(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 3 →
Dravet syndrome Female restricted epilepsy with intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PCDH19(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 47 →
Focal epilepsy with speech disorder and impaired intellectual development Pyridoxine dependent epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 365 →
Calcium metabolism disorders focal segmental glomerulosclerosis 4, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
APOL1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
GRN(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 102 →
frontotemporal dementia and/or amyotrophic lateral sclerosis 1 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
C9orf72(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 102 →
frontotemporal dementia and/or amyotrophic lateral sclerosis 2 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
CHCHD10(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 102 →
frontotemporal dementia and/or amyotrophic lateral sclerosis 3 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
SQSTM1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
frontotemporal dementia and/or amyotrophic lateral sclerosis 4 Frontotemporal dementia with motor neuron disease
1 gene
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1 of 1 corroborated by 2+ sources
TBK1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Frontotemporal dementia with motor neuron disease inclusion body myopathy with Paget disease of bone and frontotemporal dementia
1 gene
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1 of 1 corroborated by 2+ sources
VCP(4)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 102 →
Double outlet right ventricle Gallbladder agenesis
1 gene
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MYCN(1)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Gaucher disease due to saposin C deficiency Metachromatic leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
PSAP(5)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 118 →
Genetic infertility Infertility
1 gene
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1 of 1 corroborated by 2+ sources
SPATA22(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 242 →
Genetic lipodystrophy hereditary nonpolyposis colon cancer
1 gene
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1 of 1 corroborated by 2+ sources
EPHX1(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Ghosal hematodiaphyseal dysplasia Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
TBXAS1(7)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 103 →
gnathodiaphyseal dysplasia Rhabdomyolysis
1 gene
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1 of 1 corroborated by 2+ sources
ANO5(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 290 →
Gollop-wolfgang complex Split hand-foot malformation
1 gene
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1 of 1 corroborated by 2+ sources
BHLHA9(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
immune dysregulation-polyendocrinopathy-enteropathy-X-linked syndrome Occupational dermatitis
1 gene
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1 of 1 corroborated by 2+ sources
FOXP3(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
B-cell chronic lymphocytic leukemia immunodeficiency 84
1 gene
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1 of 1 corroborated by 2+ sources
IKZF3(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Cerebral embolism Infertility
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Infertility Intracranial embolism
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Infertility spermatogenic failure 5
1 gene
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1 of 1 corroborated by 2+ sources
AURKC(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 242 →
Intellectual developmental disorder expressive speech dysmorphic Penile hypospadia
1 gene
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1 of 1 corroborated by 2+ sources
SETBP1(3)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. —
Intellectual developmental disorder microcephaly cerebellar X-linked syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
CASK(2)
0.111 1.000 5.20e-4 1.06e-3 ✓ sig. Cluster 320 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.