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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Acces syndrome Ectrodactyly
1 gene
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1 of 1 corroborated by 2+ sources
UBA2(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
AKT2-related familial partial lipodystrophy Partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AKT2(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Alazami-yuan syndrome Cornelia de lange syndrome
1 gene
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TAF6(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 297 →
ALPL-related autosomal dominant hypophosphatasia Ureterolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
ALPL-related autosomal recessive hypophosphatasia Ureterolithiasis
1 gene
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1 of 1 corroborated by 2+ sources
ALPL(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
amyotrophic lateral sclerosis type 1 Iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
SOD1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 24 Saldino-noonan syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEK1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 22 →
Angelman syndrome Childhood-onset autosomal recessive slowly progressive spinocerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
TPP1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 61 →
Anterior compartment syndrome Vascular system injury
1 gene
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1 of 1 corroborated by 2+ sources
HMOX1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 371 →
Apraxia Intellectual developmental disorder hemoglobin persistence
1 gene
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1 of 1 corroborated by 2+ sources
BCL11A(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Apraxia Childhood apraxia of speech
1 gene
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1 of 1 corroborated by 2+ sources
FOXP2(4)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Apraxia Cataplexy
1 gene
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NPC1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 380 →
Apraxia Intellectual developmental disorder microcephaly strabismus behaviora
1 gene
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1 of 1 corroborated by 2+ sources
POGZ(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Ectrodactyly myopathy, centronuclear, 6, with fiber-type disproportion
1 gene
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1 of 1 corroborated by 2+ sources
MAP3K20(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Childhood absence epilepsy Nasal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Neonatal anemia Spherocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SPTB(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Angelman syndrome oculocutaneous albinism type 2
1 gene
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1 of 1 corroborated by 2+ sources
OCA2(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Other specified diabetes mellitus with unspecified complications Perisylvian syndrome
1 gene
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WFS1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Combined immunodeficiency-hypogammaglobulinemia-skeletal anomalies syndrome due to ikbka deficiency Congenital skin anomaly
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Combined immunodeficiency-hypogammaglobulinemia-skeletal anomalies syndrome due to ikbka deficiency Skin abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
CHUK(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Common migraine hypercholesterolemia, familial, 1
1 gene
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1 of 1 corroborated by 2+ sources
LDLR(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Common migraine Tricuspid atresia
1 gene
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LRP1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Comp-related skeletal dysplasia Epiphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COMP(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 248 →
Complex partial epilepsy Perisylvian syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SCN3A(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital atransferrinemia Iron deficiency anemia
1 gene
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1 of 1 corroborated by 2+ sources
TF(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.