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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Bone resorption Collagenopathy
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Bone resorption Coxa plana
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Achondroplasia Brachycephaly
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Brachycephaly Camptodactyly, tall stature, and hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Brachycephaly Catshl syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FGFR3(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Brain atrophy optic atrophy 9
1 gene
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1 of 1 corroborated by 2+ sources
ACO2(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Angelman syndrome Brown oculocutaneous albinism
1 gene
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1 of 1 corroborated by 2+ sources
OCA2(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Burnett schwartz berberian syndrome Common migraine
1 gene
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LRP1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 194 →
Carbohydrate metabolism disease Triose phosphate isomerase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TPI1(6)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 354 →
Carbohydrate metabolism disease Familial hematuria-retinal arteriolar tortuosity-contractures syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL4A1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Carotid intima-media thickness Partial lipodystrophy
1 gene
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PPARG(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 71 →
Erythrokeratodermia variabilis Palmoplantar keratoderma with congenital alopecia
1 gene
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1 of 1 corroborated by 2+ sources
GJA1(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 92 →
Erythrokeratodermia variabilis mednik syndrome
1 gene
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1 of 1 corroborated by 2+ sources
AP1S1(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Erythrokeratodermia variabilis Peripheral neuropathy with sensorineural hearing impairment syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJB3(7)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Erythrokeratodermia variabilis ichthyosiform erythroderma, corneal involvement, and hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
AP1B1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Collagenopathy Eye disorder
1 gene
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1 of 1 corroborated by 2+ sources
COL2A1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 11 →
Coxa plana Eye disorder
1 gene
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COL2A1(1)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 11 →
Culler-jones syndrome Facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 212 →
Facial dysmorphism syndrome Postaxial polydactyly–anterior pituitary anomalies–facial dysmorphism syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GLI2(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 212 →
Facial dysmorphism syndrome Preaxial polydactyly with upper back hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
SHH(3)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Facial dysmorphism syndrome Skeletal system disorder
1 gene
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1 of 1 corroborated by 2+ sources
SHH(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Familial partial lipodystrophy Partial lipodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
CIDEC(5)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 71 →
focal segmental glomerulosclerosis 4, susceptibility to Hypertensive heart disease
1 gene
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1 of 1 corroborated by 2+ sources
APOL1(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Eye disorder frontotemporal dementia and/or amyotrophic lateral sclerosis 1
1 gene
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1 of 1 corroborated by 2+ sources
C9orf72(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. —
Congenital skin anomaly geroderma osteodysplastica
1 gene
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1 of 1 corroborated by 2+ sources
GORAB(2)
0.091 1.000 6.49e-4 1.24e-3 ✓ sig. Cluster 377 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.