Gene Gene information from NCBI Gene database.
Entrez ID 50
Gene name Aconitase 2
Gene symbol ACO2
Synonyms (NCBI Gene)
ACONMHEL-S-284ICRDOCA8OPA9
Chromosome 22
Chromosome location 22q13.2
Summary The protein encoded by this gene belongs to the aconitase/IPM isomerase family. It is an enzyme that catalyzes the interconversion of citrate to isocitrate via cis-aconitate in the second step of the TCA cycle. This protein is encoded in the nucleus and f
SNPs SNP information provided by dbSNP.
7
SNP ID Visualize variation Clinical significance Consequence
rs141772938 C>G Uncertain-significance, conflicting-interpretations-of-pathogenicity, pathogenic, likely-benign Coding sequence variant, missense variant
rs150129663 C>T Likely-pathogenic Coding sequence variant, missense variant
rs747330606 G>T Pathogenic Splice donor variant
rs761368190 G>A Likely-pathogenic Coding sequence variant, missense variant
rs786200924 C>G Pathogenic Missense variant, coding sequence variant
miRNA miRNA information provided by mirtarbase database.
149
miRTarBase ID miRNA Experiments Reference
MIRT762851 hsa-miR-1228 CLIP-seq
MIRT762852 hsa-miR-1231 CLIP-seq
MIRT762853 hsa-miR-184 CLIP-seq
MIRT762854 hsa-miR-3652 CLIP-seq
MIRT762855 hsa-miR-3663-5p CLIP-seq
Gene ontology (GO) Gene Ontology (GO) annotations describing the biological processes, molecular functions, and cellular components associated with a gene.
22
GO ID Ontology Definition Evidence Reference
GO:0003994 Function Aconitate hydratase activity IBA
GO:0003994 Function Aconitate hydratase activity IEA
GO:0005506 Function Iron ion binding IDA 9630632
GO:0005506 Function Iron ion binding TAS 9630632
GO:0005739 Component Mitochondrion HDA 20833797
Other IDs Other IDs provides unique identifiers for this gene in OMIM, HGNC, and Ensembl databases.
MIM HGNC e!Ensembl
100850 118 ENSG00000100412
Protein Protein information from UniProt database.
UniProt ID Unique identifier for the protein in the UniProt database. Click to view detailed protein information.
Q99798
Protein name Aconitate hydratase, mitochondrial (Aconitase) (EC 4.2.1.3) (Citrate hydro-lyase)
Protein function Catalyzes the isomerization of citrate to isocitrate via cis-aconitate.
Family and domains

Pfam

Accession ID Position in sequence Description Type
PF00330 Aconitase 67 503 Aconitase family (aconitate hydratase) Family
PF00694 Aconitase_C 582 712 Aconitase C-terminal domain Domain
Sequence
Sequence length 780
Interactions View interactions
Associated diseases Disease associations from ClinVar (causal & non-causal) and other databases (OMIM, Orphanet, GWAS, etc.).
46
Evidence Score: ★☆☆☆☆  Gene-disease association found in Text Mining only ★★☆☆☆  Found in Text Mining and Unknown/Other Associations ★★★☆☆  Reported in Unknown/Other Associations across ≥2 Sources ★★★★☆  ClinVar: Pathogenic/Likely Pathogenic (<5 Variants) ★★★★★  ClinVar: Pathogenic/Likely Pathogenic (≥5 Variants)
Causal Diseases associated with Pathogenic or Likely Pathogenic variants in ClinVar
Phenotype Name Clinical Significance dbSNP ID RCV Accession Evidence Score
ACO2-related disorder Likely pathogenic; Pathogenic rs747330606, rs2518233282, rs751460831 RCV004782301
RCV004534297
RCV000509125
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Infantile cerebellar-retinal degeneration Pathogenic; Likely pathogenic rs1397401279, rs2146127288, rs772325936, rs368044961, rs2518224688, rs786204828, rs786204829, rs786204830, rs1114167284, rs2518222254, rs786200924, rs1601927180, rs1601936467, rs2066538446, rs2066594367 RCV001449910
RCV001542715
RCV001542716
RCV002226915
RCV002292697
View all (10 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Optic atrophy Pathogenic; Likely pathogenic rs786204830, rs2518189757 RCV004815265
RCV004818310
★★★★☆
ClinVar: Pathogenic / Likely Pathogenic (<5 Variants)
Optic atrophy 9 Pathogenic; Likely pathogenic rs2146139034, rs2518236207, rs2518229785, rs2518189757, rs2518236265, rs2066653512 RCV001591860
RCV002289392
RCV002292698
RCV003237326
RCV003482903
View all (1 more)
★★★★★
ClinVar: Pathogenic / Likely Pathogenic (≥5 Variants)
Unknown / Other Associations ClinVar entries with uncertain/conflicting evidence, and associations from other databases (OMIM, Orphanet, GWAS, etc.) where the gene is not established as causal.
Phenotype Name Clinical Significance Source Evidence Score
Acute intermittent porphyria Conflicting classifications of pathogenicity ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Acute myeloid leukemia Benign ClinVar
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
ASTHMA GWAS catalog
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
AUTOSOMAL RECESSIVE ISOLATED OPTIC ATROPHY Disgenet, Orphanet
Disgenet, Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Associations from Text Mining Disease associations identified through text mining
Disease Name Disease (Merged) Source PMID Relationship Type Evidence Score
Anxiety Anxiety disorder Pubtator 32519519 Associate
★☆☆☆☆
Found in Text Mining only
Arachnoid Cysts Arachnoid cyst CLINVAR_DG
★☆☆☆☆
Found in Text Mining only
Ataxia Ataxia Pubtator 28545339, 32519519 Associate
★☆☆☆☆
Found in Text Mining only
Atrophy Atrophy Pubtator 33028849 Associate
★☆☆☆☆
Found in Text Mining only
Autosomal recessive isolated optic atrophy Optic Atrophy Orphanet
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Bipolar Disorder Bipolar Disorder BEFREE 26782057
★☆☆☆☆
Found in Text Mining only
Breast Carcinoma Breast Carcinoma GWASCAT_DG 29059683
★★☆☆☆
Found in Text Mining + Unknown/Other Associations
Breast Neoplasms Breast neoplasm Pubtator 31819175 Inhibit
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy BEFREE 25351951, 31106992
★☆☆☆☆
Found in Text Mining only
Cerebellar atrophy Cerebellar atrophy HPO_DG
★☆☆☆☆
Found in Text Mining only