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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Autoimmune hemolytic anemia Degenerative polyarthritis
1 gene
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TLR8(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 321 →
Chilblain lupus erythematosus Deoxyguanosine kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 150 →
12q14 microdeletion syndrome Tietz syndrome
1 gene
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1 of 1 corroborated by 2+ sources
LEMD3(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 175 →
Hyperuricemic nephropathy Tonne-kalscheuer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
REN(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Hyperkalemia Urinary bladder diseases
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 112 →
22q13 monosomy syndrome Urinary bladder diseases
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 112 →
Common arterial trunk with aortic dominance Velocardiofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 283 →
Common arterial trunk with pulmonary dominance and interrupted aortic arch Velocardiofacial syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TBX1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 283 →
Arachnodactyly Visual system disorder
1 gene
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1 of 1 corroborated by 2+ sources
EFEMP1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Telomere syndrome X-linked dyskeratosis congenita
1 gene
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RTEL1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 64 →
Ocular albinism X-linked ocular abinism
1 gene
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1 of 1 corroborated by 2+ sources
GPR143(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Xeroderma pigmentosum-cockayne syndrome Xfe progeroid syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ERCC4(6)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Arthralgia Disseminated superficial actinic porokeratosis
1 gene
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1 of 1 corroborated by 2+ sources
MVK(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Ataxia with oculomotor apraxia Cerebellar ataxia, intellectual disability, oculomotor apraxia, cerebellar cysts
1 gene
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1 of 1 corroborated by 2+ sources
LAMA1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Ataxia with oculomotor apraxia Dna repair-deficiency disorders
1 gene
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1 of 1 corroborated by 2+ sources
PNKP(6)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Auditory perceptual disorder Polymorphous corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
VSX1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 75 →
Auditory perceptual disorder Posterior polymorphous corneal dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
VSX1(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 75 →
Autoinflammation with infantile enterocolitis Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIPK1(4)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 264 →
autosomal dominant medullary cystic kidney disease with or without hyperuricemia Hyperuricemic nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
UMOD(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 23 →
Bilateral microphthalmos Hallermanns syndrome
1 gene
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GJA1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 92 →
Bilateral microphthalmos Schwartz-lelek syndrome
1 gene
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GJA1(1)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Diabetes macrovascular complications Factor v deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F5(5)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. Cluster 37 →
Diaphyseal bone disorder Immune dysregulation-inflammatory bowel disease-arthritis-recurrent infection syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGFB1(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Cyanosis Dihydrolipoamide dehydrogenase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYB5R3(2)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —
Disseminated superficial actinic porokeratosis Mevalonate kinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MVK(3)
0.143 0.500 6.49e-4 1.24e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.