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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ataxia telangiectasia ATM-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
ATM(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 348 →
Autoimmune lymphoproliferative disorder autoimmune lymphoproliferative syndrome type 1
1 gene
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1 of 1 corroborated by 2+ sources
FASLG(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Autoimmune lymphoproliferative disorder autoimmune lymphoproliferative syndrome type 2A
1 gene
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1 of 1 corroborated by 2+ sources
CASP10(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 18 →
Autoimmune lymphoproliferative disorder autoimmune lymphoproliferative syndrome type 2B
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
autoimmune lymphoproliferative syndrome type 2B Melanocytic nevus
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
autosomal dominant macrothrombocytopenia Macrothrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Avoidant restrictive food intake disorder Sleep disorder
1 gene
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1 of 1 corroborated by 2+ sources
APOE(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 177 →
b-cell immunodeficiency, distal limb anomalies, and urogenital malformations Prostatic intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
TOP2B(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 193 →
Beta-ureidopropionase deficiency Infantile spasms
1 gene
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1 of 1 corroborated by 2+ sources
UPB1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 328 →
H syndrome Hypertrichosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC29A3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Ductal carcinoma Hereditary diffuse gastric and lobular breast cancer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hereditary diffuse gastric and lobular breast cancer syndrome Prostatic intraepithelial neoplasia
1 gene
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1 of 1 corroborated by 2+ sources
CDH1(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hereditary hemolytic anemia inherited glutathione synthetase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
GSS(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 105 →
Demyelinating diseases Hereditary neuropathy with liability to pressure palsies
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 8
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S3(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome Ocular albinism with sensorineural deafness
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 10
1 gene
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1 of 1 corroborated by 2+ sources
AP3D1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
AP3B1(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
HPS1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 11
1 gene
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1 of 1 corroborated by 2+ sources
BLOC1S5(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
HPS3(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Hermansky-pudlak syndrome hermansky-pudlak syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
HPS4(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
HPS5(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
HPS6(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 174 →
Hermansky-pudlak syndrome hermansky-pudlak syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
DTNBP1(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.