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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Arthrogryposis Contractures, pterygia, and spondylocarpotarsal fusion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH3(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Arthrogryposis Contractures, pterygia, and variable skeletal fusions syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH3(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Copper overload cirrhosis Hyper-ige syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 205 →
Copper overload cirrhosis Lymphoproliferative disorder of natural killer cells
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 205 →
Copper overload cirrhosis STAT3-related early-onset multisystem autoimmune disease
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 205 →
Copper overload cirrhosis hyper-IgE recurrent infection syndrome 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
STAT3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 205 →
Coralliform cataract Lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYGD(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 43 →
Coronary vessel anomalies Hereditary hemolytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
GCLC(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 105 →
Adrenocortical carcinoma Cushing's disease
1 gene
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1 of 1 corroborated by 2+ sources
TP53(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Cardiovascular abnormalities Deafness-lymphedema-leukemia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GATA2(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 136 →
Deglutition disorder Early-onset myopathy-areflexia-respiratory distress-dysphagia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Deglutition disorder MEGF10-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
MEGF10(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Deglutition disorder Dopamine transporter deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A3(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Delayed sleep phase syndrome Sleep disorder
1 gene
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1 of 1 corroborated by 2+ sources
CRY1(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 177 →
Adrenocortical carcinoma Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 3 →
Choroid plexus carcinoma Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
TP53(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 3 →
Choroid plexus papilloma Demyelinating diseases
1 gene
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1 of 1 corroborated by 2+ sources
TP53(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 3 →
Macrothrombocytopenia Thrombasthenia-thrombocytopenia
1 gene
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1 of 1 corroborated by 2+ sources
GFI1B(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Short qt syndrome Timothy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1C(7)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Arthrogryposis TPM2-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM2(2)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 202 →
Congenital fiber type disproportion myopathy TPM2-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM2(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Congenital fiber type disproportion myopathy TPM3-related myopathy
1 gene
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1 of 1 corroborated by 2+ sources
TPM3(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —
Macrothrombocytopenia TPM4-related platelet disorder
1 gene
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1 of 1 corroborated by 2+ sources
TPM4(3)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 33 →
Trichorrhexis nodosa syndrome Trichothiodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
MPLKIP(6)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. Cluster 86 →
Hyperinsulinemic hypoglycemia Type a insulin resistance syndrome
1 gene
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1 of 1 corroborated by 2+ sources
INSR(4)
0.083 1.000 7.14e-4 1.34e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.