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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Dna replication fork stabilization factor donson-related microcephaly, short stature, limb abnormalities spectrum Ear, patella, short stature syndrome
1 gene
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DONSON(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
Dna2-related mitochondrial dna deletion syndrome Rothmund-thomson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DNA2(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 80 →
Dominant dystrophic epidermolysis bullosa with absence of skin Duane retraction syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COL7A1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 160 →
Dominant dystrophic epidermolysis bullosa, albopapular type Duane retraction syndrome
1 gene
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COL7A1(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 160 →
Duane retraction syndrome Osteochondroma
1 gene
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1 of 1 corroborated by 2+ sources
PTPN11(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Duane retraction syndrome Osteolysis, hereditary, of carpal bones with or without nephropathy
1 gene
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1 of 1 corroborated by 2+ sources
MAFB(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Duane retraction syndrome duane retraction syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
CHN1(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ductal carcinoma of breast Esophageal stenosis
1 gene
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1 of 1 corroborated by 2+ sources
SOD2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Angina pectoris Dysbiosis
1 gene
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TLR4(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ear, patella, short stature syndrome meier-gorlin syndrome 7
1 gene
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1 of 1 corroborated by 2+ sources
CDC45(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ear, patella, short stature syndrome Trichiasis
1 gene
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MCM7(1)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Ear, patella, short stature syndrome meier-gorlin syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
CDC6(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
EEM syndrome Hypotrichosis simplex
1 gene
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1 of 1 corroborated by 2+ sources
CDH3(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Congenital aneurysm of ascending aorta ehlers-danlos syndrome, vascular type
1 gene
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1 of 1 corroborated by 2+ sources
COL3A1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
2q37 microdeletion syndrome Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Acral self-healing collodion baby Congenital nonbullous ichthyosiform erythroderma
1 gene
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1 of 1 corroborated by 2+ sources
TGM1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 233 →
Aland island eye disease Congenital stationary night blindness
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1F(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Alanine-glyoxylate aminotransferase deficiency Hyperoxaluria
1 gene
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1 of 1 corroborated by 2+ sources
AGXT(8)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 296 →
Alexander disease Trigeminal neuralgia
1 gene
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1 of 1 corroborated by 2+ sources
GFAP(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Alstrom syndrome Fetal akinesia deformation sequence
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
amyotrophic lateral sclerosis type 22 Frontotemporal dementia with or without amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
TUBA4A(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 24 Majewski syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEK1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 22 →
amyotrophic lateral sclerosis, susceptibility to, 25 Frontotemporal dementia with or without amyotrophic lateral sclerosis
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Kidney disease Nephronophthisis-like nephropathy
2 genes
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2 of 2 corroborated by 2+ sources
XPNPEP3(6), SLC41A1(5)
0.005 1.000 7.60e-4 1.41e-3 ✓ sig. —
Atrial flutter Ileocolitis
2 genes
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PHLDB2(1), PLCXD2(1)
0.023 0.250 7.50e-4 1.40e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.