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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ear, patella, short stature syndrome meier-gorlin syndrome 2
1 gene
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1 of 1 corroborated by 2+ sources
ORC4(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
Ear, patella, short stature syndrome meier-gorlin syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
ORC6(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
Ear, patella, short stature syndrome meier-gorlin syndrome 4
1 gene
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1 of 1 corroborated by 2+ sources
CDT1(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
Ear, patella, short stature syndrome meier-gorlin syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
GMNN(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 171 →
MERTK-related retinopathy Thromboembolism
1 gene
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1 of 1 corroborated by 2+ sources
MERTK(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 55 →
methylmalonic acidemia due to transcobalamin receptor defect Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CD320(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
methylmalonic acidemia with homocystinuria, type cblJ Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ABCD4(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
methylmalonic aciduria due to methylmalonyl-coa mutase deficiency Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Megaloblastic anemia methylmalonic aciduria, cblA type
1 gene
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1 of 1 corroborated by 2+ sources
MMAA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
methylmalonic aciduria, cblA type Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMAA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 106 →
Methylmalonyl-coa mutase deficiency Vitamin b deficiency
1 gene
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1 of 1 corroborated by 2+ sources
MMUT(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Lennox-gastaut syndrome Mowat-wilson syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ZEB2(7)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Intestinal neoplasms multiple endocrine neoplasia type 4
1 gene
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1 of 1 corroborated by 2+ sources
CDKN1B(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Frontotemporal dementia with or without amyotrophic lateral sclerosis Multiple familial trichoepithelioma
1 gene
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1 of 1 corroborated by 2+ sources
CYLD(6)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
myasthenic syndrome, congenital, 1b, fast-channel Postsynaptic congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA1(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 34 →
Cerebral atherosclerosis Rin2 syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RIN2(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Charcot-Marie-Tooth disease type 2D Congenital pes cavus
1 gene
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1 of 1 corroborated by 2+ sources
GARS1(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 15 →
Charcot-Marie-Tooth disease type 4C Congenital pes cavus
1 gene
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1 of 1 corroborated by 2+ sources
SH3TC2(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Charcot-Marie-tooth disease, axonal, type 2DD Vestibular disease
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Cholecystitis Mucosulfatidosis
1 gene
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1 of 1 corroborated by 2+ sources
SUMF1(3)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 237 →
Choroidal neovascularization Diabetes complications
1 gene
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1 of 1 corroborated by 2+ sources
VEGFA(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
ciliary dyskinesia, primary, 39 Hypophosphatemic rickets
1 gene
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1 of 1 corroborated by 2+ sources
LRRC56(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. Cluster 18 →
ciliopathy-IFT74 Majewski syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IFT74(2)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Coenzyme q10 deficiency Deafness, encephaloneuropathy, obesity, valvulopathy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PDSS1(5)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —
Coenzyme q10 deficiency Coq7-related distal hereditary motor neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
COQ7(4)
0.077 1.000 7.79e-4 1.41e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.