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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
46, xy disorder of sex development Testotoxicosis
1 gene
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1 of 1 corroborated by 2+ sources
LHCGR(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 38 →
Advanced sleep phase syndrome Homocystinuria with megaloblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
PER3(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 121 →
Anauxetic dysplasia Metaphyseal dysplasia
1 gene
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CCDC107(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Anterior polar cataract Non-syndromic cataract
1 gene
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1 of 1 corroborated by 2+ sources
CRYBB3(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 43 →
Anti-nmda receptor encephalitis Selective immunoglobulin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
IFIH1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Antisocial personality disorder Orthostatic hypotension
1 gene
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1 of 1 corroborated by 2+ sources
ABCB1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 57 →
Apnea Hyperexplexia hereditary
1 gene
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SLC6A5(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Apolipoprotein b hypobetalipoproteinemia Benign mucous membrane pemphigoid with ocular involvement
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Apolipoprotein b hypobetalipoproteinemia Bouillaud’s disease
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Acute disseminated encephalomyelitis Apolipoprotein b hypobetalipoproteinemia
1 gene
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1 of 1 corroborated by 2+ sources
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Greither disease Olmsted syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PERP(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Ovarian diseases Uterine cancer
1 gene
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1 of 1 corroborated by 2+ sources
CYP19A1(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hepatic fibrosis Hypercholanemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC10A1(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hereditary hemophagocytic lymphohistiocytosis Microvillus inclusion disease
1 gene
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1 of 1 corroborated by 2+ sources
STXBP2(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hypercalcemic tumoral calcinosis Idiopathic infantile hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
KL(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Arachnoid cysts Hyperexplexia hereditary
1 gene
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1 of 1 corroborated by 2+ sources
GPHN(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Dystonia, dopa-responsive, with or without hyperphenylalaninemia Hyperphenylalaninemia
1 gene
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1 of 1 corroborated by 2+ sources
SPR(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Hyperphosphatemic tumoral calcinosis Idiopathic infantile hypercalcemia
1 gene
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1 of 1 corroborated by 2+ sources
KL(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Basal cell nevus syndrome Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Autoimmune polyendocrine syndrome Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
AIRE(7)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 1 →
Insulin dependent diabetes mellitus secretory diarrhea syndrome Ritscher-schinzler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCDC22(5)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. —
Intellectual developmental disorder dysmorphic behavioral Muir-torre syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 166 →
Intellectual developmental disorder dysmorphic behavioral mismatch repair cancer syndrome 1
1 gene
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1 of 1 corroborated by 2+ sources
MSH6(2)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 166 →
Cortical dysplasia Intellectual developmental disorder speech autism dysmorphic
1 gene
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TBR1(1)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 275 →
Chilblain lupus Interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(4)
0.143 0.333 7.79e-4 1.41e-3 ✓ sig. Cluster 150 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.