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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Anhidrotic ectodermal dysplasia with immunodeficiency, osteopetrosis, and lymphedema Granulomatous disease
1 gene
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1 of 1 corroborated by 2+ sources
G6PD(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 87 →
Autoinflammatory disease, systemic, x-linked Granulomatous disease
1 gene
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1 of 1 corroborated by 2+ sources
G6PD(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 87 →
Bone marrow failure syndromes Growth hormone insensitivity syndrome with immune dysregulation
1 gene
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1 of 1 corroborated by 2+ sources
ERCC6L2(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 3 →
22q11.2 deletion syndrome Dysphonia
1 gene
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1 of 1 corroborated by 2+ sources
COMT(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Anaplasia Maffucci syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HIF1A(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Aortic atherosclerosis Diabetic polyneuropathy
1 gene
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NYAP2(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Asperger syndrome Post-operative myocardial infarction
1 gene
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FHIT(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Autoinflammatory disease, familial, behcet-like 3 Hepatic insufficiency
1 gene
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1 of 1 corroborated by 2+ sources
RELA(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Maffucci syndrome Sclerosteosis
1 gene
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1 of 1 corroborated by 2+ sources
LRP4(7)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Spectrum and myeloid neoplasm risk Urogenital abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
SAMD9(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Imperforate anus Syndactyly of the toes
1 gene
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CUL9(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Normal pressure hydrocephalus primary ciliary dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
CFAP43(4)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 133 →
Cebalid syndrome Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Chediak-higashi syndrome Optic neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
LYST(7)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cataract-microcornea syndrome Chromosome 1q21.1 deletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GJA8(6)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Small cell carcinoma Thoracic neoplasms
1 gene
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SMARCA4(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Charge syndrome Uinary system neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
WDR11(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Congenital arteriovenous malformation Usher syndrome type 2
1 gene
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1 of 1 corroborated by 2+ sources
ADGRV1(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Disseminated intravascular coagulation Water intoxication
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Tubulointerstitial kidney disease Xanthomatosis
1 gene
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1 of 1 corroborated by 2+ sources
ABCG5(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Corneal ulcer Ovarian hyperstimulation syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Benign pemphigus Demyelinating hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 80 →
Darier disease Demyelinating hereditary motor and sensory neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
FBLN5(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 80 →
Charge syndrome Intermittent hydrarthrosis
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Cardiac conduction disease Keppen-lubinsky syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYH6(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.