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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Laryngeal disease Vissers-bodmer syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IPO8(5)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cryoglobulinemia Hepatic fibrosis
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hepatic fibrosis Intrahepatic bile duct cancer
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hepatic fibrosis Ovarian mucinous adenocarcinoma
1 gene
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1 of 1 corroborated by 2+ sources
IFNL3(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Cadasil hereditary breast carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
ATRIP(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hypocalcemia Hypoparathyroidism
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Hypoparathyroidism Rickets
1 gene
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1 of 1 corroborated by 2+ sources
PTH(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
C1q deficiency Exanthema
1 gene
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1 of 1 corroborated by 2+ sources
C1QA(5)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Gitelman syndrome Pfaundler-hurler syndrome
1 gene
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IDUA(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Clubfoot Pfaundler-hurler syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PITX1(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Proximal spinal muscular atrophy Tay-sachs disease
1 gene
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SETX(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Shprintzen-goldberg syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SKI(6)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Congenital respiratory system anomaly
1 gene
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TGFB2(1)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital musculoskeletal anomalies Craniofacial dysmorphism skeletal anomalies intellectual disability syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TMCO1(4)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Congenital hypoplasia of lung De lange syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NIPBL(3)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
Benign infantile epilepsy familial sleep-related hypermotor epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. —
familial sleep-related hypermotor epilepsy Focal onset epileptic seizure
1 gene
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1 of 1 corroborated by 2+ sources
CHRNB2(2)
0.111 0.333 1.17e-3 1.90e-3 ✓ sig. Cluster 273 →
Fabry disease Mitral valve disease
1 gene
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ACE(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 195 →
Disseminated intravascular coagulation Factor xiii deficiency
1 gene
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1 of 1 corroborated by 2+ sources
F13A1(6)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Fanconi-bickel syndrome Transient neonatal diabetes mellitus
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A2(5)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 36 →
Follicular lymphoma Thromboangiitis obliterans
1 gene
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1 of 1 corroborated by 2+ sources
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. Cluster 1 →
Combined pituitary hormone deficiency Genetic panhypopituitarism
1 gene
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1 of 1 corroborated by 2+ sources
PROP1(3)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Dysphonia Glucocorticoid deficiency
1 gene
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COMT(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Glucocorticoid deficiency Toe syndactyly-telecanthus-anogenital and renal malformations syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAR(2)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —
Glycoprotein ia deficiency Von willebrand disorder
1 gene
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ITGA2(1)
0.091 0.500 1.17e-3 1.90e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.