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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Ataxia Cataplexy
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Hemorrhagic disease macrothrombocytopenia, isolated, 1, autosomal dominant
1 gene
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1 of 1 corroborated by 2+ sources
TUBB1(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. Cluster 33 →
Epidermolysis bullosa mucopolysaccharidosis type 2
1 gene
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1 of 1 corroborated by 2+ sources
IDS(2)
0.045 1.000 1.36e-3 2.15e-3 ✓ sig. —
Cardiac arrest Coronary aneurysm
2 genes
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2 of 2 corroborated by 2+ sources
KCNN2(2), NEBL(2)
0.035 0.077 1.32e-3 2.09e-3 ✓ sig. —
Anhedonia Esophageal atresia
2 genes
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ATP1A3(1), CACNA1C(1)
0.035 0.077 1.32e-3 2.09e-3 ✓ sig. —
Eye abnormalities Ocular hypertension
2 genes
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1 of 2 corroborated by 2+ sources
CRPPA(3), SH3PXD2B(1)
0.031 0.118 1.31e-3 2.08e-3 ✓ sig. —
Disruptive impulse-control and conduct disorder Myoclonic dystonia
1 gene
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1 of 1 corroborated by 2+ sources
DRD2(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 325 →
Myoclonic encephalopathy Tubulinopathy
1 gene
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1 of 1 corroborated by 2+ sources
TUBA1A(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Neural tube defects, susceptibility to Sacral agenesis
1 gene
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1 of 1 corroborated by 2+ sources
TBXT(5)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Ewing sarcoma Extraskeletal ewing sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
EWSR1(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Ewing sarcoma Visceral heterotaxy
1 gene
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1 of 1 corroborated by 2+ sources
CIROZ(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Aplasia cutis congenita Galactokinase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITGB4(3)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Glycogen phosphorylase kinase deficiency Ocular albinism
1 gene
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1 of 1 corroborated by 2+ sources
PHKA2(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Male breast carcinoma Male breast neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
RAD51B(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Hypochromic microcytic anemia Microcytic anemia
1 gene
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1 of 1 corroborated by 2+ sources
SLC11A2(7)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 227 →
Gastrointestinal neoplasms Miller-dieker syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HIC1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
muscular dystrophy, limb-girdle, autosomal dominant Paresthesia
1 gene
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1 of 1 corroborated by 2+ sources
CAPN3(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
complex neurodevelopmental disorder with or without congenital anomalies Congenital ptosis
1 gene
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1 of 1 corroborated by 2+ sources
MYH10(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
Congenital chloride diarrhea Congenital diarrhea
1 gene
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1 of 1 corroborated by 2+ sources
GRWD1(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 172 →
Chilblain lupus erythematosus Interferonopathy
1 gene
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1 of 1 corroborated by 2+ sources
SAMHD1(6)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 150 →
Cerebellar atrophy with seizures and variable developmental delay Paroxysmal nonkinesigenic dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(4)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 58 →
Auriculocondylar syndrome Bronchiolitis obliterans
1 gene
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1 of 1 corroborated by 2+ sources
EDN1(7)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. —
22q13.3 deletion syndrome Urinary bladder diseases
1 gene
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1 of 1 corroborated by 2+ sources
INS(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 112 →
Sacral agenesis Vitamin a deficiency
1 gene
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1 of 1 corroborated by 2+ sources
BMP4(2)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 24 →
Respiratory system neoplasm Waldenstrom macroglobulinemia
1 gene
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IRF4(1)
0.111 0.250 1.30e-3 2.06e-3 ✓ sig. Cluster 1 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.