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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital lamellar cataract Lamellar cataract
1 gene
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1 of 1 corroborated by 2+ sources
HSF4(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 43 →
Macrothrombocytopenia Parkinson-dementia complex of guam
1 gene
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1 of 1 corroborated by 2+ sources
TRPM7(3)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Congenital short bowel syndrome Post-operative acute kidney injury
1 gene
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1 of 1 corroborated by 2+ sources
CLMP(4)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Central precocious puberty Temple syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DLK1(2)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Central serous retinopathy Panuveitis
1 gene
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1 of 1 corroborated by 2+ sources
CFH(2)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 107 →
Anhydramnios Cerebellar malformation
1 gene
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TMEM67(1)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Chorioretinal atrophy Silver-russell syndrome
1 gene
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-(1)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. Cluster 199 →
Cochlear diseases Retinitis pigmentosa-deafness syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PCDH15(2)
0.077 0.500 1.43e-3 2.23e-3 ✓ sig. —
Cerebellar vermis atrophy Cerebral arteriovenous malformations
1 gene
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SYN3(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 175 →
Cernunnos-XLF deficiency Syndactyly
1 gene
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1 of 1 corroborated by 2+ sources
NHEJ1(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 352 →
Chylothorax Heterotaxy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PKD1L1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 46 →
Coasy protein-associated neurodegeneration Mucopolysaccharidosis
1 gene
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1 of 1 corroborated by 2+ sources
COASY(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Coenzyme a synthase protein associated neurodegeneration Mucopolysaccharidosis
1 gene
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COASY(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
SEC61A1 deficiency Severe congenital neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
SEC61A1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Sialolithiasis Vesiculobullous skin disease
1 gene
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PRKN(1)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Sialolithiasis TRAF3 haploinsufficiency
1 gene
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1 of 1 corroborated by 2+ sources
TRAF3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Sialolithiasis Wolcott-rallison syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK3(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 338 →
Cerebral arteriovenous malformations sorsby fundus dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
TIMP3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Spontaneous coronary artery dissection Venous thrombosis
1 gene
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1 of 1 corroborated by 2+ sources
F3(2)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 55 →
Dysarthria Striatal neurodegeneration
1 gene
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1 of 1 corroborated by 2+ sources
PDE8B(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. —
Congenital muscular dystrophy myopathy caused by variation in CRPPA
1 gene
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1 of 1 corroborated by 2+ sources
CRPPA(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in FKRP
1 gene
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1 of 1 corroborated by 2+ sources
FKRP(5)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in FKTN
1 gene
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1 of 1 corroborated by 2+ sources
FKTN(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in GMPPB
1 gene
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1 of 1 corroborated by 2+ sources
GMPPB(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →
Congenital muscular dystrophy myopathy caused by variation in POMGNT1
1 gene
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1 of 1 corroborated by 2+ sources
POMGNT1(4)
0.043 1.000 1.43e-3 2.23e-3 ✓ sig. Cluster 14 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.