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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Boomerang dysplasia Bullous pemphigoid
1 gene
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1 of 1 corroborated by 2+ sources
FLNB(6)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Boomerang dysplasia Congenital clubfoot
1 gene
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1 of 1 corroborated by 2+ sources
FLNB(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Hemophilia a carriers
1 gene
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1 of 1 corroborated by 2+ sources
F8(3)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anti-neutrophil antibody associated vasculitis Thiopurine immunosuppressant-induced pancreatitis
1 gene
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0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 1 →
Short-rib thoracic dysplasia Thoracic malformation
1 gene
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1 of 1 corroborated by 2+ sources
FGF4(3)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Restrictive cardiomyopathy Timothy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CACNA1C(6)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Polycystic liver disease SEC61A1 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
SEC61A1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 23 →
Polycystic liver disease SEC61B-related polycystic liver disease
1 gene
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1 of 1 corroborated by 2+ sources
SEC61B(3)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 23 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 16 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT52(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 17 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNLT2B(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 19 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
IFT81(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 7 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
WDR35(5)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Short-rib thoracic dysplasia short-rib thoracic dysplasia 8 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I1(4)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 22 →
Skeletal dysplasia skeletal dysplasia, mild, with joint laxity and advanced bone age
1 gene
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1 of 1 corroborated by 2+ sources
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 68 →
Congenital impairment of spermatozoa motility spermatogenic failure 18
1 gene
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1 of 1 corroborated by 2+ sources
DNAH1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Congenital impairment of spermatozoa motility spermatogenic failure 19
1 gene
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1 of 1 corroborated by 2+ sources
CFAP43(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Congenital impairment of spermatozoa motility spermatogenic failure 38
1 gene
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1 of 1 corroborated by 2+ sources
ARMC2(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 31 →
Congenital impairment of spermatozoa motility spermatogenic failure 39
1 gene
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1 of 1 corroborated by 2+ sources
DNAH17(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. Cluster 31 →
Skeletal dysplasia spondyloepiphyseal dysplasia with congenital joint dislocations
1 gene
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1 of 1 corroborated by 2+ sources
CHST3(3)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
sulfite oxidase deficiency due to molybdenum cofactor deficiency type A Systemic mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
MOCS1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
asphyxiating thoracic dystrophy 2 Short-rib thoracic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(4)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Anterior segment dysgenesis Axonal neuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GBF1(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Baralle-macken syndrome Skeletal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
COPB1(4)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —
Beemer-langer syndrome Short-rib thoracic dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
IFT80(2)
0.042 1.000 1.49e-3 2.31e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.