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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hemorrhage platelet-type bleeding disorder 8
1 gene
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1 of 1 corroborated by 2+ sources
P2RY12(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Polyneuropathy Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
primordial dwarfism-immunodeficiency-lipodystrophy syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
PRIM1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Progressive myoclonic epilepsy Progressive myoclonic epilepsy with renal failure
1 gene
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1 of 1 corroborated by 2+ sources
SEMA6B(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 329 →
Cerebrocostomandibular syndrome Mixed connective tissue disease
1 gene
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1 of 1 corroborated by 2+ sources
SNRPB(6)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 12 →
Charcot-Marie-Tooth disease type 1A Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
PMP22(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Charcot-Marie-tooth disease, axonal, type 2DD Hyperaldosteronism
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A1(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 1p32-p31 deletion syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Chromosome 1p32-p31 deletion syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate cardiac defects impaired intellectual development Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate congenital heart defect intellectual disability syndrome due to 15q14 microdeletion Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
MEIS2(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate proliferative retinopathy developmental delay Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
LRRC32(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Cleft palate with ankyloglossia Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(5)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Cleft palate x-linked Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
17-beta-hydroxysteroid dehydrogenase deficiency Myoclonic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
HSD17B3(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
1p31p32 microdeletion syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
1p31p32 microdeletion syndrome Uterine polyp
1 gene
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1 of 1 corroborated by 2+ sources
NFIA(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
2q37 microdeletion syndrome Mixed connective tissue disease
1 gene
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1 of 1 corroborated by 2+ sources
HDAC4(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Abruzzo-erickson syndrome Uranostaphyloschisis
1 gene
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1 of 1 corroborated by 2+ sources
TBX22(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 282 →
Acys amyloidosis Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
CST3(3)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Adult polyglucosan body disease Polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
GBE1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 24 Short rib dysplasia-polydactyly syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NEK1(4)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 22 →
leukodystrophy, adult-onset, autosomal dominant, without amyloid angiopathy Meningioma
1 gene
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1 of 1 corroborated by 2+ sources
CST3(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Hereditary atrial fibrillation long qt syndrome 5
1 gene
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1 of 1 corroborated by 2+ sources
KCNE1(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. —
Deficiency anemia methylmalonic acidemia due to transcobalamin receptor defect
1 gene
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1 of 1 corroborated by 2+ sources
CD320(2)
0.040 1.000 1.56e-3 2.38e-3 ✓ sig. Cluster 106 →

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.