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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Hydrocephalus primary ciliary dyskinesia 5
1 gene
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1 of 1 corroborated by 2+ sources
HYDIN(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Arthritis Primary immunodeficiency with defective natural killer cell cytotoxicity
1 gene
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1 of 1 corroborated by 2+ sources
FCGR3A(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 1 →
Amino acid metabolism disorder pulmonary veno-occlusive disease and/or pulmonary capillary haemangiomatosis
1 gene
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1 of 1 corroborated by 2+ sources
EIF2AK4(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
1p21.3 microdeletion syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
DPYD(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
AIPL1-related retinopathy Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
AIPL1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
ALG6-congenital disorder of glycosylation 1C Cystic kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ALG6(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 8 →
Alstrom syndrome Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
ALMS1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Aminoaciduria Urethral obstruction
1 gene
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1 of 1 corroborated by 2+ sources
CLTRN(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 153 →
amyotrophic lateral sclerosis type 19 Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
ERBB4(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
amyotrophic lateral sclerosis, susceptibility to, 25 Dyskinesia
1 gene
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1 of 1 corroborated by 2+ sources
KIF5A(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder Arginase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ARG1(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Congenital plasminogen activator inhibitor deficiency type 1 Urethral obstruction
1 gene
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1 of 1 corroborated by 2+ sources
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Continuous spike and wave during sleep syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Amino acid metabolism disorder Coronary vessel anomalies
1 gene
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1 of 1 corroborated by 2+ sources
GCLC(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Cortical dysplasia-focal epilepsy syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
CNTNAP2(4)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 179 →
craniosynostosis 4 Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
ERF(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Creutzfeldt-jakob disease SRD5A3-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
SRD5A3(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 158 →
Bradycardia Cyp2d6 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CYP2D6(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 13 →
Amino acid metabolism disorder Cystathioninuria
1 gene
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1 of 1 corroborated by 2+ sources
CTH(6)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 83 →
Deafness with congenital and adult-onset progressive leukodystrophy Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
KARS1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Anhedonia Cerebellar ataxia, areflexia, pes cavus, optic atrophy, and sensorineural hearing loss
1 gene
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1 of 1 corroborated by 2+ sources
ATP1A3(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Charcot-Marie-Tooth disease axonal type 2N Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
AARS1(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Christianson syndrome Leukodystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SLC9A6(5)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —
Chromosome 2p16.3 deletion syndrome Language development disorders
1 gene
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1 of 1 corroborated by 2+ sources
NRXN1(3)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. Cluster 179 →
ciliary dyskinesia, primary, 40 Hydrocephalus
1 gene
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1 of 1 corroborated by 2+ sources
DNAH9(2)
0.037 1.000 1.69e-3 2.53e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.