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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Gonadal dysgenesis Ovarian teratoma
1 gene
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1 of 1 corroborated by 2+ sources
BMP15(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 38 →
neurometabolic disorder due to serine deficiency Osteomyelitis
1 gene
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1 of 1 corroborated by 2+ sources
PHGDH(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Imerslund-grasbeck syndrome Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
CUBN(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 106 →
Angiokeratoma Fabry disease
1 gene
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1 of 1 corroborated by 2+ sources
GLA(7)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Congenital vertebral-cardiac-renal anomalies syndrome Vitamin deficiency disorder
1 gene
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1 of 1 corroborated by 2+ sources
NADSYN1(3)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Corneal ulcer Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Distal renal tubular acidosis Hereditary xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Distal renal tubular acidosis Xerocytosis
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Distal renal tubular acidosis Hennekam syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCBE1(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Dystonia musculorum deformans Early-onset generalized limb-onset dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TOR1A(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 167 →
Early-onset generalized limb-onset dystonia Genetic torsion dystonia
1 gene
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1 of 1 corroborated by 2+ sources
TOR1A(4)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 167 →
Sitosterolemia Tubulointerstitial kidney disease
1 gene
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1 of 1 corroborated by 2+ sources
ABCG5(7)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Ellis-van creveld syndrome Sitosterolemia
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Nocturnal frontal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(6)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 273 →
Childhood-onset epilepsy syndrome Epilepsy of infancy with migrating focal seizures
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(3)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Childhood-onset epilepsy syndrome Malignant migrating partial seizures of infancy
1 gene
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1 of 1 corroborated by 2+ sources
KCNT1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Circadian rhythm sleep disorder Splenic disease
1 gene
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CNTN5(1)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Benign mucous membrane pemphigoid with ocular involvement Follicular lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 1 →
Bouillaud’s disease Follicular lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. Cluster 1 →
Three-vessel coronary artery disease Thromboembolic pulmonary hypertension
1 gene
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1 of 1 corroborated by 2+ sources
ABO(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Chondrosarcoma Trichorhinophalangeal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EXT1(5)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Haddad syndrome Hyperphenylalaninemia
1 gene
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PAH(1)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
overgrowth syndrome and/or cerebral malformations due to abnormalities in MTOR pathway genes Small cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
MTOR(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
progressive myoclonus epilepsy Right atrial isomerism
1 gene
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1 of 1 corroborated by 2+ sources
CERS1(2)
0.083 0.333 1.75e-3 2.61e-3 ✓ sig. —
Parkinson-dementia syndrome Progressive supranuclear palsy
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(7)
0.036 1.000 1.75e-3 2.61e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.