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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital contractural arachnodactyly X-linked spondyloepimetaphyseal dysplasia
1 gene
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1 of 1 corroborated by 2+ sources
BGN(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital contractural arachnodactyly X-linked thoracic aortic aneurysm
1 gene
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1 of 1 corroborated by 2+ sources
BGN(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly Xq25 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital contractural arachnodactyly Rienhoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGFB3(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly Patterson stevenson fontaine syndrome
1 gene
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LMBR1(1)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Heart valve prolapse Pyoderma gangrenosum
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Boudin-mortier syndrome Congenital contractural arachnodactyly
1 gene
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1 of 1 corroborated by 2+ sources
NPR3(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 12 →
Bullous pyoderma gangrenosum Heart valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
PTPN6(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Caspase 8 deficiency Cerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
CASP8(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
familial acute necrotizing encephalopathy Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
RANBP2(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
fanconi anemia complementation group i Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FANCI(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 97 →
Focal segmental glomerulosclerosis focal segmental glomerulosclerosis 3, susceptibility to
1 gene
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1 of 1 corroborated by 2+ sources
CD2AP(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Focal segmental glomerulosclerosis focal segmental glomerulosclerosis and neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 30 →
Developmental delay with dysmorphic facies and dental anomalies Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
SATB1(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome DPAGT1-congenital disorder of glycosylation
1 gene
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1 of 1 corroborated by 2+ sources
DPAGT1(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Benign congenital myopathy Duchenne muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy Dystrophinopathy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy progressive muscular dystrophy
1 gene
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1 of 1 corroborated by 2+ sources
DMD(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 213 →
Duchenne muscular dystrophy Retrograde amnesia
1 gene
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1 of 1 corroborated by 2+ sources
PREP(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
ectodermal dysplasia 10b, hypohidrotic/hair/tooth type, autosomal recessive Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
EDAR(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly holoprosencephaly 12 with or without pancreatic agenesis
1 gene
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1 of 1 corroborated by 2+ sources
CNOT1(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly holoprosencephaly-hypokinesia-congenital contractures syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPKOW(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 96 →
Congenital contractural arachnodactyly Homocystinuria
1 gene
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1 of 1 corroborated by 2+ sources
CBS(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Hearing loss Lipoyltransferase deficiency
2 genes
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1 of 2 corroborated by 2+ sources
LIPT1(6), MITD1(1)
0.005 0.667 1.86e-3 2.74e-3 ✓ sig. —
Chiari-frommel syndrome Male pseudohypopituitarism
1 gene
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LHB(1)
0.091 0.250 1.82e-3 2.68e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.