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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Parkinson-dementia syndrome Temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
MAPT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
PROM1-related dominant retinopathy Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
PROM1-related recessive retinopathy Transitional cell carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
PROM1(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hyperkinesia Prostatic disease
1 gene
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1 of 1 corroborated by 2+ sources
OXT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Osteochondrodysplasias radioulnar synostosis with amegakaryocytic thrombocytopenia 1
1 gene
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1 of 1 corroborated by 2+ sources
HOXA11(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hemolytic uremic syndrome hemolytic uremic syndrome, atypical, 8, with rhizomelic short stature
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 359 →
hereditary fructose intolerance Hypoxia
1 gene
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1 of 1 corroborated by 2+ sources
ALDOB(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Hyperthermia Transitional cell carcinoma
1 gene
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GPX1(1)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Jeune thoracic dystrophy nephronophthisis 12
1 gene
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1 of 1 corroborated by 2+ sources
TTC21B(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 22 →
Bronchitis Neurodevelopmental disorder with dilated cardiomyopathy
1 gene
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1 of 1 corroborated by 2+ sources
CAMK2D(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 1 →
Hyperkinesia neurodevelopmental disorder with language impairment and behavioral abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
GRIA2(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 13 →
obsolete Stüve-Wiedemann syndrome Osteochondrodysplasias
1 gene
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1 of 1 corroborated by 2+ sources
LIFR(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Jeune thoracic dystrophy orofaciodigital syndrome type 14
1 gene
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1 of 1 corroborated by 2+ sources
C2CD3(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
MCM9-related gametogenic failure Testicular azoospermia
1 gene
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1 of 1 corroborated by 2+ sources
MCM9(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hemolytic uremic syndrome membranoproliferative glomerulonephritis
1 gene
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1 of 1 corroborated by 2+ sources
DGKE(5)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
microphthalmia, syndromic 2 Sarcoma
1 gene
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1 of 1 corroborated by 2+ sources
BCOR(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne thrombocytopenia 4
1 gene
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1 of 1 corroborated by 2+ sources
CYCS(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Colitis thrombocytopenia 6
1 gene
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1 of 1 corroborated by 2+ sources
SRC(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 114 →
Hemolytic uremic syndrome Thrombomodulin-related bleeding disorder
1 gene
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1 of 1 corroborated by 2+ sources
THBD(6)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hemolytic uremic syndrome Upshaw-schulman syndrome
1 gene
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1 of 1 corroborated by 2+ sources
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Chloracne Uridine monophosphate hydrolase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
NT5C3A(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Bronchitis Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Peripheral vascular disease Urinary bladder dysfunction
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA3(3)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —
Hypoxia Wernicke encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
TKT(2)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. Cluster 21 →
Transitional cell carcinoma Xq25 microduplication syndrome
1 gene
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1 of 1 corroborated by 2+ sources
STAG2(4)
0.029 1.000 2.14e-3 3.04e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.