Log in to save this analysis

Save This Analysis

What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Malignant migrating partial seizures of infancy Rolandic epilepsy
5 genes
Show details
3 of 5 corroborated by 2+ sources
SCN1A(2), SCN2A(1), TBC1D24(5), KCNT1(1), PLCB1(2)
0.096 0.556 2.66e-11 2.79e-10 ✓ sig. —
Epilepsy with auditory features Lateral temporal lobe epilepsy
3 genes
Show details
3 of 3 corroborated by 2+ sources
RELN(3), DEPDC5(2), LGI1(4)
0.500 0.750 2.63e-11 2.77e-10 ✓ sig. —
Epilepsy of infancy with migrating focal seizures West syndrome
5 genes
Show details
5 of 5 corroborated by 2+ sources
KCNQ2(2), SCN1A(2), SCN2A(2), PLCB1(2), PIGA(2)
0.143 0.556 2.48e-12 2.85e-11 ✓ sig. —
Frontal lobe epilepsy Nocturnal frontal lobe epilepsy
4 genes
Show details
4 of 4 corroborated by 2+ sources
CHRNB2(5), CRH(2), CHRNA4(5), KCNT1(5)
0.364 0.800 2.69e-13 3.42e-12 ✓ sig. Cluster 273 →
genetic developmental and epileptic encephalopathy Rolandic epilepsy
8 genes
Show details
8 of 8 corroborated by 2+ sources
WWOX(2), SZT2(2), SCN1A(2), SCN1B(2), KCNQ3(2), CSTB(2), PLCB1(2), SPTAN1(2)
0.105 0.222 1.14e-13 1.47e-12 ✓ sig. —
Dravet syndrome Generalized epilepsy with febrile seizures plus
5 genes
Show details
5 of 5 corroborated by 2+ sources
GABRG2(4), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2)
0.250 0.625 3.39e-14 4.54e-13 ✓ sig. Cluster 47 →
Generalized epilepsy with febrile seizures plus Rolandic epilepsy
7 genes
Show details
6 of 7 corroborated by 2+ sources
CPA6(2), RELN(1), GABRG2(3), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2)
0.123 0.438 1.73e-14 2.38e-13 ✓ sig. Cluster 47 →
Dravet syndrome Rolandic epilepsy
6 genes
Show details
6 of 6 corroborated by 2+ sources
GABRG2(3), SCN1A(5), SCN1B(3), SCN2A(2), PCDH19(3), SCN9A(2)
0.120 0.750 1.62e-14 2.23e-13 ✓ sig. Cluster 47 →
Benign myoclonic epilepsy Familial adult myoclonic epilepsy
5 genes
Show details
5 of 5 corroborated by 2+ sources
ADRA2B(2), CNTN2(3), MARCHF6(4), SAMD12(4), YEATS2(4)
0.500 0.833 4.66e-17 7.63e-16 ✓ sig. Cluster 357 →
Adult myoclonic epilepsy Benign myoclonic epilepsy
6 genes
Show details
6 of 6 corroborated by 2+ sources
CTNND2(3), ADRA2B(3), CNTN2(3), MARCHF6(3), SAMD12(3), YEATS2(3)
0.667 1.000 1.51e-21 3.07e-20 ✓ sig. Cluster 357 →
Febrile convulsion Generalized epilepsy with febrile seizures plus
9 genes
Show details
9 of 9 corroborated by 2+ sources
CPA6(6), HCN1(7), GABRG2(6), ADGRV1(6), SCN1A(8), SCN1B(7), SCN2A(2), SCN9A(2), STX1B(7)
0.300 0.563 4.23e-23 9.26e-22 ✓ sig. Cluster 47 →
Adult myoclonic epilepsy Familial adult myoclonic epilepsy
7 genes
Show details
7 of 7 corroborated by 2+ sources
RAPGEF2(5), TNRC6A(5), ADRA2B(2), CNTN2(3), MARCHF6(5), SAMD12(5), YEATS2(4)
0.700 0.875 1.57e-24 3.73e-23 ✓ sig. Cluster 357 →
Progressive myoclonic epilepsy progressive myoclonus epilepsy
9 genes
Show details
9 of 9 corroborated by 2+ sources
SCARB2(5), PRICKLE1(5), SEMA6B(2), GOSR2(6), NUS1(2), SERPINI1(2), KCTD7(6), KCNC1(5), CERS1(7)
0.360 1.000 9.77e-27 2.63e-25 ✓ sig. Cluster 329 →
Epilepsy of infancy with migrating focal seizures Malignant migrating partial seizures of infancy
9 genes
Show details
9 of 9 corroborated by 2+ sources
KCNQ2(3), SCN1A(3), SCN2A(2), SLC12A5(3), TBC1D24(2), KCNT1(2), PLCB1(3), PIGA(3), SLC25A22(3)
0.900 1.000 7.47e-33 2.51e-31 ✓ sig. —
Epilepsy Seizures
37 genes
Show details
34 of 37 corroborated by 2+ sources
FOXG1(2), CHRNA7(3), ATP1A3(1), CPA6(2), HCN1(2), HTR1A(2), KCNQ2(5), RBFOX1(3), SCN8A(5), SLC6A1(2), ACHE(2), BCHE(2) +25 more
0.109 0.262 8.39e-36 3.13e-34 ✓ sig. —
Generalized epilepsy Partial epilepsy
21 genes
Show details
1 of 21 corroborated by 2+ sources
CUX2(1), GABRA2(1), GRM3(1), OGA(1), PCDH7(1), RPH3A(1), TRIM36(1), ALDH2(1), VRK2(1), GBF1(1), SCN1A(3), TNKS(1) +9 more
0.236 0.477 6.88e-40 2.87e-38 ✓ sig. —
Epilepsy Intellectual developmental disorder
81 genes
Show details
63 of 81 corroborated by 2+ sources
FOXG1(2), UBE3A(2), CHRNA7(2), ANKRD11(2), HNRNPU(2), WWOX(1), ARID1B(2), AUTS2(4), CHD2(2), CNTNAP2(2), CPA6(2), GRIA1(5) +69 more
0.084 0.348 3.70e-45 1.75e-43 ✓ sig. —
Epilepsy Partial epilepsy
30 genes
Show details
7 of 30 corroborated by 2+ sources
CACNA1H(1), CUX2(1), GABRA2(1), GRM3(1), OGA(1), PCDH7(1), PTPRD(1), RPH3A(1), SCN8A(2), TRIM36(1), ALDH2(1), CDKL5(2) +18 more
0.121 0.682 3.50e-45 1.66e-43 ✓ sig. —
Developmental and epileptic encephalopathy Epilepsy
57 genes
Show details
54 of 57 corroborated by 2+ sources
FOXG1(3), UBE3A(2), GABRD(3), HNRNPU(4), WWOX(6), ATP1A2(6), ATP1A3(5), CELSR1(2), CHD2(5), CNTNAP2(3), CUX2(6), GABRA2(6) +45 more
0.144 0.259 4.92e-55 2.78e-53 ✓ sig. —
Epilepsy Generalized epilepsy
44 genes
Show details
7 of 44 corroborated by 2+ sources
CHRNA7(3), AUTS2(3), CHRM3(1), CUX2(1), GABRA2(1), GRM3(1), HTR1A(1), OGA(1), PCDH7(1), RBFOX1(3), RPH3A(1), TRIM36(1) +32 more
0.173 0.677 5.37e-66 3.67e-64 ✓ sig. —

Showing 20 of 420 matching pairs, sorted by significance (descending). Click a column header to sort.