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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Eye manifestations Partial epilepsy with variable foci
1 gene
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1 of 1 corroborated by 2+ sources
APP(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 116 →
Lafora body disease Progressive myoclonic epilepsy with intracellular inclusions
1 gene
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1 of 1 corroborated by 2+ sources
PRDM8(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
Minor epilepsy Nasal obstruction
1 gene
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1 of 1 corroborated by 2+ sources
NPY(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
neurodevelopmental disorder with hypotonia, epilepsy, and absent speech neurodevelopmental disorder with speech delay, movement abnormalities, and seizures
1 gene
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UNC13A(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
neurodevelopmental disorder with microcephaly, impaired language, and gait abnormalities neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
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NARS1(1)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked epilepsy with learning disability and behavior disorder syndrome X-linked epilepsy with variable learning disabilities and behavior disorders
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(4)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked epilepsy with learning disability and behavior disorder syndrome X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(2)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked epilepsy with variable learning disabilities and behavior disorders X-linked epilepsy-learning disabilities-behavior disorders syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SYN1(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. —
X-linked lissencephaly X-linked spasticity-intellectual disability-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ARX(5)
0.500 1.000 6.49e-5 2.33e-4 ✓ sig. Cluster 259 →
Cystitis Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
NGF(2), POMC(2)
0.077 0.167 5.81e-5 2.33e-4 ✓ sig. —
Bladder exstrophy progressive myoclonus epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
GOSR2(2), NUS1(2)
0.069 0.222 6.34e-5 2.33e-4 ✓ sig. —
Absence epilepsy Ataxia
2 genes
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CACNA1A(1), CACNA2D2(1)
0.074 0.286 3.70e-5 1.70e-4 ✓ sig. Cluster 47 →
Benign infantile epilepsy Myoclonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
CHRNA2(2), KCNQ3(3)
0.069 0.333 3.48e-5 1.60e-4 ✓ sig. —
Childhood absence epilepsy Hepatic encephalopathy
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(3), GABRA1(3)
0.087 0.200 3.44e-5 1.58e-4 ✓ sig. —
Childhood absence epilepsy Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
GABRG2(2), GABRB3(4)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 47 →
Childhood absence epilepsy Idiopathic generalized epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
GABRA1(3), SLC2A1(4)
0.095 0.200 2.50e-5 1.17e-4 ✓ sig. Cluster 47 →
Absence epilepsy Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CACNA1A(3), GABRB3(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. Cluster 47 →
Epilepsy with myoclonic atonic seizures Lennox-gastaut syndrome
2 genes
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2 of 2 corroborated by 2+ sources
CHD2(3), SCN1A(3)
0.111 0.286 1.17e-5 5.71e-5 ✓ sig. —
Generalized epilepsy with febrile seizures plus Hemiplegic migraine
2 genes
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2 of 2 corroborated by 2+ sources
SCN1A(8), PRRT2(2)
0.100 0.400 1.01e-5 5.00e-5 ✓ sig. —
Dravet syndrome Epilepsy of infancy with migrating focal seizures
2 genes
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2 of 2 corroborated by 2+ sources
SCN1A(4), SCN2A(2)
0.125 0.250 8.49e-6 4.23e-5 ✓ sig. —
Skin ulcer Tonic-clonic epilepsy
2 genes
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2 of 2 corroborated by 2+ sources
NGF(2), FGF2(2)
0.118 0.333 8.34e-6 4.16e-5 ✓ sig. Cluster 330 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital brain malformation
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Cerebellar hypoplasia/atrophy, epilepsy, and global developmental delay Congenital hypoplasia of part of brain
3 genes
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CASK(1), SEPSECS(1), KIAA0586(1)
0.059 0.176 7.80e-6 3.93e-5 ✓ sig. Cluster 110 →
Hemangiosarcoma Temporal lobe epilepsy
3 genes
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3 of 3 corroborated by 2+ sources
VEGFA(2), TEK(2), KDR(2)
0.061 0.167 7.16e-6 3.62e-5 ✓ sig. —
Generalized epilepsy with febrile seizures plus Temporal lobe epilepsy
3 genes
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2 of 3 corroborated by 2+ sources
ANO4(1), CPA6(4), RELN(2)
0.064 0.188 4.93e-6 2.56e-5 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (descending). Click a column header to sort.