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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Absence epilepsy Juvenile absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 47 →
Autism-epilepsy syndrome Maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Benign mesial temporal lobe epilepsy Familial temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Continuous spike and wave during sleep syndrome Familial temporal lobe epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Wolf-hirschhorn syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PIGG(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 159 →
Epilepsy with myoclonic atonic seizures familial hemiplegic migraine
1 gene
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1 of 1 corroborated by 2+ sources
SCN1A(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Chromosome 17q23.1-q23.2 deletion syndrome Epilepsy with myoclonic atonic seizures
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 124 →
Epilepsy with myoclonic atonic seizures GLUT1 deficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 124 →
Epilepsy with myoclonic absence Epilepsy with myoclonic atonic seizures
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 124 →
Epilepsy with myoclonic atonic seizures Intellectual developmental disorder seizures epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. Cluster 124 →
Familial temporal lobe epilepsy Sacroiliac arthritis
1 gene
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1 of 1 corroborated by 2+ sources
RELN(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Familial temporal lobe epilepsy Sacroiliac joint synovitis
1 gene
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1 of 1 corroborated by 2+ sources
RELN(4)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Familial temporal lobe epilepsy Focal epilepsy with speech disorder and impaired intellectual development
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2A(3)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
generalized epilepsy-paroxysmal dyskinesia syndrome Gingival diseases
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(2)
0.125 1.000 4.55e-4 9.73e-4 ✓ sig. —
Congenital cardiomyopathy Myoclonic epilepsy with ragged red fibers
1 gene
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ND5(1)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. Cluster 32 →
Myoclonic epilepsy with ragged red fibers Pyogenic arthritis-pyoderma gangrenosum-acne syndrome
1 gene
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1 of 1 corroborated by 2+ sources
IL1B(2)
0.200 0.500 3.90e-4 8.67e-4 ✓ sig. —
Benign infantile epilepsy neonatal-onset developmental and epileptic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Choreoathetosis Epilepsy with myoclonic absence
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 124 →
Benign infantile epilepsy Cognitive impairment with or without cerebellar ataxia
1 gene
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1 of 1 corroborated by 2+ sources
SCN8A(6)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Benign infantile epilepsy neonatal encephalopathy with non-epileptic myoclonus
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ2(3)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Benign infantile epilepsy self-limited familial neonatal epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
KCNQ3(2)
0.143 1.000 3.90e-4 8.67e-4 ✓ sig. Cluster 165 →
Benign mesial temporal lobe epilepsy Periventricular heterotopia
1 gene
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1 of 1 corroborated by 2+ sources
CPA6(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 259 →
Cerebellar atrophy with seizures and variable developmental delay generalized epilepsy-paroxysmal dyskinesia syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNMA1(5)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 58 →
Frontal lobe epilepsy Intracranial hypertension
1 gene
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1 of 1 corroborated by 2+ sources
SLC4A10(2)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 273 →
Epilepsy with myoclonic absence Intraductal noninfiltrating carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
SLC2A1(3)
0.167 1.000 3.25e-4 7.71e-4 ✓ sig. Cluster 124 →

Showing 25 of 420 matching pairs, sorted by significance (descending). Click a column header to sort.