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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Al-raqad syndrome Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
DCPS(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. Cluster 6 →
Anus neoplasms Seizures
1 gene
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IFNB1(1)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Apolipoprotein a5 deficiency Hyperlipidemia
1 gene
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1 of 1 corroborated by 2+ sources
APOA5(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. Cluster 254 →
Apolipoprotein c-ii deficiency Hyperlipidemia
1 gene
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1 of 1 corroborated by 2+ sources
APOC2(5)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
autosomal recessive nonsyndromic hearing loss 63 Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
LRTOMT(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Beta-ketothiolase deficiency Seizures
1 gene
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1 of 1 corroborated by 2+ sources
ACAT1(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Beukes hip dysplasia Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
UFSP2(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
neurodevelopmental disorder with cerebellar atrophy and motor dysfunction Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
GEMIN5(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
neurodevelopmental disorder with microcephaly, ataxia, and seizures Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SARS1(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
nizon-isidor syndrome Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MED12L(3)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
combined immunodeficiency due to DOCK8 deficiency Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
DOCK8(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Congenital cataract microcephaly intellectual disability syndrome Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MED25(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
congenital disorder of glycosylation, type iit Hyperlipidemia
1 gene
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1 of 1 corroborated by 2+ sources
GALNT2(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. Cluster 254 →
Hyperlipidemia immunodeficiency 53
1 gene
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1 of 1 corroborated by 2+ sources
RELB(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder dysmorphic brain Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TRAPPC9(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder growth other organ Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
PPM1D(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder growth seizures Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
ABCA2(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder neuropsychiatric Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SLC45A1(5)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder seizures language Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
SETD1B(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Intellectual developmental disorder short stature behavioral Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
IQSEC1(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Hyperlipidemia Saccharopinuria
1 gene
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1 of 1 corroborated by 2+ sources
AASS(7)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
Seizures seizures, early-onset, with neurodegeneration and brain calcifications
1 gene
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1 of 1 corroborated by 2+ sources
NRROS(5)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. Cluster 13 →
MAN1B1-congenital disorder of glycosylation Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
MAN1B1(4)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
muscular dystrophy-dystroglycanopathy (congenital with brain and eye anomalies), type a, 11 Nonsyndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —
developmental and epileptic encephalopathy, 77 Seizures
1 gene
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1 of 1 corroborated by 2+ sources
PIGQ(2)
0.007 1.000 9.16e-3 1.05e-2 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (descending). Click a column header to sort.