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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
Congenital hypotonia, epilepsy, developmental delay, and digital anomalies Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
ATN1(4)
0.000 1.000 1.65e-1 1.66e-1 —
Autism Autism-epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 9.50e-2 9.60e-2 —
Autism X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(5)
0.001 1.000 9.50e-2 9.60e-2 —
Bipolar disorder X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.001 1.000 7.92e-2 8.03e-2 —
NACC1-related neurodevelopmental disorder with epilepsy, cataracts and episodic irritability Obesity
1 gene
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1 of 1 corroborated by 2+ sources
NACC1(2)
0.001 1.000 7.75e-2 7.87e-2 —
Neurodevelopmental disorder neurodevelopmental disorder with microcephaly, impaired language, epilepsy, and gait abnormalities
1 gene
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1 of 1 corroborated by 2+ sources
NARS1(6)
0.001 1.000 6.09e-2 6.25e-2 —
Neurodevelopmental disorder neurodevelopmental disorder with microcephaly, epilepsy, and brain atrophy
1 gene
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1 of 1 corroborated by 2+ sources
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
PIGG(4)
0.001 1.000 6.09e-2 6.25e-2 —
Neurodevelopmental disorder neurodevelopmental disorder with epilepsy, spasticity, and brain atrophy
1 gene
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1 of 1 corroborated by 2+ sources
TRAPPC4(5)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
NACC1-related neurodevelopmental disorder with epilepsy, cataracts and episodic irritability Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
NACC1(6)
0.001 1.000 6.09e-2 6.25e-2 Cluster 6 →
Intellectual developmental disorder seizures epilepsy Neurodevelopmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(4)
0.001 1.000 6.09e-2 6.25e-2 —
Early-onset epilepsy-intellectual disability-brain anomalies syndrome Intellectual developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
PIGG(4)
0.001 1.000 5.25e-2 5.42e-2 —
Autism-epilepsy syndrome Intellectual developmental disorder
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.001 1.000 5.25e-2 5.42e-2 —
Intellectual developmental disorder Intellectual developmental disorder seizures epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(4)
0.001 1.000 5.25e-2 5.42e-2 —
Multiple sclerosis X-linked epilepsy with or without intellectual disability and dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
GABRA3(4)
0.002 1.000 3.74e-2 3.93e-2 ✓ sig. —
Genetic generalized epilepsy Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
TNK2(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Autism-epilepsy syndrome Parkinson disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDK(2)
0.002 1.000 3.44e-2 3.63e-2 ✓ sig. —
Epilepsy Lewis lung carcinoma
1 gene
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1 of 1 corroborated by 2+ sources
TXNRD1(2)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
Congenital stromal corneal dystrophy Epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
SPARCL1(3)
0.004 0.500 3.00e-2 3.19e-2 ✓ sig. —
neurodevelopmental disorder with epilepsy, spasticity, and brain atrophy Non-specific syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
TRAPPC4(3)
0.003 1.000 2.39e-2 2.57e-2 ✓ sig. Cluster 6 →
Intellectual developmental disorder seizures epilepsy Non-specific syndromic intellectual disability
1 gene
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1 of 1 corroborated by 2+ sources
AP2M1(3)
0.003 1.000 2.39e-2 2.57e-2 ✓ sig. —
Eczema Juvenile absence epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
EFHC1(2)
0.003 1.000 2.37e-2 2.55e-2 ✓ sig. —
Male infertility round headed spermatozoa Rolandic epilepsy
1 gene
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1 of 1 corroborated by 2+ sources
DPY19L2(2)
0.019 0.143 2.12e-2 2.30e-2 ✓ sig. —
Generalized epilepsy Glycine encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
GLDC(7)
0.014 0.200 2.09e-2 2.27e-2 ✓ sig. —
Gastroesophageal reflux disease neonatal/infantile epilepsy syndrome
1 gene
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1 of 1 corroborated by 2+ sources
KCNH5(2)
0.004 1.000 1.81e-2 1.98e-2 ✓ sig. —

Showing 25 of 420 matching pairs, sorted by significance (descending). Click a column header to sort.