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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
0 selected Clear
Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▼ Shared cluster
colorectal adenocarcinoma cutaneous melanoma
0 genes
0.250 0.000 1.00e+0 1.00e+0 —
colon adenocarcinoma cutaneous melanoma
0 genes
0.250 0.000 1.00e+0 1.00e+0 —
colon adenocarcinoma colorectal adenocarcinoma
0 genes
0.250 0.000 1.00e+0 1.00e+0 —
Anauxetic dysplasia Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
CCDC107(2)
0.000 0.250 5.90e-1 5.91e-1 —
Autism Chromosome y microdeletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
DDX3Y(2)
0.001 0.125 5.50e-1 5.50e-1 —
Cartilage-hair hypoplasia Diabetes mellitus type 2
1 gene
Show details
1 of 1 corroborated by 2+ sources
CCDC107(2)
0.000 0.500 3.60e-1 3.60e-1 —
2,4-dienoyl-coa reductase deficiency Diabetes mellitus type 2
1 gene
Show details
1 of 1 corroborated by 2+ sources
NADK2(4)
0.000 0.500 3.60e-1 3.60e-1 —
Auroneurodental syndrome Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
HYAL3(2)
0.000 0.500 3.60e-1 3.60e-1 Cluster 2 →
Diabetes mellitus type 2 Trimethylaminuria
1 gene
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1 of 1 corroborated by 2+ sources
FMO4(2)
0.000 0.500 3.60e-1 3.60e-1 —
Breast cancer Hydatidiform mole
1 gene
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1 of 1 corroborated by 2+ sources
TOP6BL(5)
0.001 0.167 3.50e-1 3.50e-1 —
Ear disorder Schizophrenia
1 gene
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SCML4(1)
0.000 0.500 3.03e-1 3.03e-1 Cluster 2 →
Atrial fibrillation Hydatidiform mole
1 gene
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1 of 1 corroborated by 2+ sources
MEI1(6)
0.001 0.167 2.93e-1 2.93e-1 —
Gout Hydatidiform mole
1 gene
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1 of 1 corroborated by 2+ sources
TOP6BL(5)
0.001 0.167 2.80e-1 2.80e-1 —
Alzheimer disease Ear disorder
1 gene
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SCML4(1)
0.000 0.500 2.67e-1 2.68e-1 Cluster 2 →
Alzheimer disease Partial hydatidiform mole
1 gene
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1 of 1 corroborated by 2+ sources
NLRP7(2)
0.000 0.500 2.67e-1 2.68e-1 —
Alzheimer disease Peroxisomal acyl-coa oxidase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ACOX1(6)
0.000 0.500 2.67e-1 2.68e-1 —
Alzheimer disease Primary coenzyme q10 deficiency
1 gene
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1 of 1 corroborated by 2+ sources
COQ6(2)
0.000 0.500 2.67e-1 2.68e-1 —
Alzheimer disease Auditory neuropathy with optic atrophy
1 gene
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1 of 1 corroborated by 2+ sources
GRIN2C(2)
0.000 0.500 2.67e-1 2.68e-1 —
Alzheimer disease Carey-fineman-ziter syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MYMK(5)
0.000 0.500 2.67e-1 2.68e-1 —
3m syndrome Autism
1 gene
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1 of 1 corroborated by 2+ sources
CUL7(5)
0.001 0.333 2.59e-1 2.59e-1 —
Birk-aharoni syndrome Major depressive disorder
1 gene
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1 of 1 corroborated by 2+ sources
PSMC1(3)
0.001 0.500 2.38e-1 2.39e-1 Cluster 2 →
Carboxypeptidase n deficiency Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
CPN1(4)
0.000 1.000 2.00e-1 2.00e-1 —
Bilateral cleft lip Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
PLEKHA5(2)
0.000 1.000 2.00e-1 2.00e-1 —
Cerebellar hypoplasia-intellectual disability-congenital microcephaly-dystonia-anemia-growth retardation syndrome Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
VPS4A(4)
0.000 1.000 2.00e-1 2.00e-1 —
Ataxia, combined cerebellar and peripheral, with hearing loss and diabetes mellitus Diabetes mellitus type 2
1 gene
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1 of 1 corroborated by 2+ sources
DNAJC3(4)
0.000 1.000 2.00e-1 2.00e-1 —

Showing 25 of 22038 pairs, sorted by significance (descending). Click a column header to sort.