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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Alzheimer disease ciliary dyskinesia, primary, 49, without situs inversus
1 gene
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1 of 1 corroborated by 2+ sources
CFAP74(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease ciliary dyskinesia, primary, 53
1 gene
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1 of 1 corroborated by 2+ sources
CLXN(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Cleft lip and palate, craniofacial dysmorphism, congenital heart defect, hearing loss syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HYAL2(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease nemaline myopathy 10
1 gene
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1 of 1 corroborated by 2+ sources
LMOD3(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease optic atrophy 3
1 gene
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1 of 1 corroborated by 2+ sources
OPA3(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease HAVCR2-related cancer predisposition
1 gene
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1 of 1 corroborated by 2+ sources
HAVCR2(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Hyperammonemic encephalopathy
1 gene
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1 of 1 corroborated by 2+ sources
CA5A(5)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Carbonic anhydrase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
CA5A(4)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Cardiofacio-neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CCDC32(5)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Pancreatic insufficiency syndrome
1 gene
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1 of 1 corroborated by 2+ sources
COX4I2(4)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Parkinsonism with polyneuropathy
1 gene
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1 of 1 corroborated by 2+ sources
UQCRC1(3)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease Pash syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NCSTN(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease perrault syndrome 3
1 gene
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1 of 1 corroborated by 2+ sources
CLPP(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease polyglucosan body myopathy 1 with or without immunodeficiency
1 gene
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1 of 1 corroborated by 2+ sources
RBCK1(2)
0.000 1.000 1.44e-1 1.45e-1 —
Alzheimer disease purine nucleoside phosphorylase deficiency
1 gene
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1 of 1 corroborated by 2+ sources
PNP(2)
0.000 1.000 1.44e-1 1.45e-1 —
Atrichia with papular lesions Obesity
1 gene
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1 of 1 corroborated by 2+ sources
HR(6)
0.001 0.500 1.49e-1 1.50e-1 —
Intellectual developmental disorder Thiamine-responsive maple syrup urine disease
1 gene
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1 of 1 corroborated by 2+ sources
BCKDHA(2)
0.001 0.333 1.49e-1 1.50e-1 —
Bipolar disorder Birk-aharoni syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSMC1(3)
0.001 0.500 1.52e-1 1.53e-1 Cluster 2 →
Bile duct disease Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
FECH(3)
0.001 0.500 1.62e-1 1.63e-1 —
Auroneurodental syndrome Metabolic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
HYAL3(2)
0.001 0.500 1.62e-1 1.63e-1 Cluster 2 →
aspartylglucosaminuria Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
AGA(2)
0.000 1.000 1.65e-1 1.66e-1 —
Asplenia Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
RPSA(3)
0.000 1.000 1.65e-1 1.66e-1 —
Birbeck granule deficiency Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
CD207(4)
0.000 1.000 1.65e-1 1.66e-1 —
Brain calcification Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
FARSB(2)
0.000 1.000 1.65e-1 1.66e-1 —
cardiomyopathy, dilated, 2g Schizophrenia
1 gene
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1 of 1 corroborated by 2+ sources
LMOD2(2)
0.000 1.000 1.65e-1 1.66e-1 —

Showing 25 of 20825 pairs, sorted by significance (ascending). Click a column header to sort.