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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Barber-say syndrome Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(7)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
bardet-biedl syndrome 16 Focal glomerulosclerosis
1 gene
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1 of 1 corroborated by 2+ sources
SDCCAG8(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Bilateral congenital mydriasis Movement disorder
1 gene
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ITPR1(1)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Focal glomerulosclerosis focal segmental glomerulosclerosis and neurodevelopmental syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TRIM8(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. Cluster 30 →
Folic acid deficiency Osteosarcoma
1 gene
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DHFR(1)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Focal glomerulosclerosis free sialic acid storage disease
1 gene
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1 of 1 corroborated by 2+ sources
SLC17A5(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Gaucher disease-ophthalmoplegia-cardiovascular calcification syndrome Movement disorder
1 gene
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1 of 1 corroborated by 2+ sources
GBA1(4)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Ghosal hematodiaphyseal dysplasia Lymphoblastic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
TBXAS1(8)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Focal glomerulosclerosis glomerulopathy with fibronectin deposits 2
1 gene
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1 of 1 corroborated by 2+ sources
FN1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
glycogen storage disease VI Lymphoblastic leukemia
1 gene
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1 of 1 corroborated by 2+ sources
PYGL(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Bilateral vestibulopathy Osteosarcoma
1 gene
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1 of 1 corroborated by 2+ sources
RFC1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Bjornstad syndrome Movement disorder
1 gene
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1 of 1 corroborated by 2+ sources
BCS1L(6)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
dilated cardiomyopathy 1Y Neutropenia
1 gene
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1 of 1 corroborated by 2+ sources
TPM1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Lymphoblastic leukemia PAX5-related B lymphopenia and autism spectrum disorder
1 gene
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1 of 1 corroborated by 2+ sources
PAX5(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Movement disorder POLR3A-related disorder
1 gene
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1 of 1 corroborated by 2+ sources
POLR3A(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
combined immunodeficiency due to MALT1 deficiency Diffuse large b-cell lymphoma
1 gene
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1 of 1 corroborated by 2+ sources
MALT1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
complex movement disorder with or without neurodevelopmental features Movement disorder
1 gene
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1 of 1 corroborated by 2+ sources
HPCA(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Compton-north congenital myopathy Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Congenital ectodermal dysplasia of face Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TWIST2(2)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Congenital lethal myopathy Dry eye syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CNTN1(3)
0.017 1.000 3.70e-3 4.74e-3 ✓ sig. —
Birk-aharoni syndrome Neurodevelopmental disorder
2 genes
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1 of 2 corroborated by 2+ sources
PSMC1(5), NRDE2(1)
0.002 1.000 3.71e-3 4.74e-3 ✓ sig. —
Buratti-harel syndrome Neurodevelopmental disorder
2 genes
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1 of 2 corroborated by 2+ sources
LONP2(1), SIAH1(5)
0.002 1.000 3.71e-3 4.74e-3 ✓ sig. Cluster 6 →
Cochlear diseases Mitochondrial dna depletion syndrome
1 gene
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1 of 1 corroborated by 2+ sources
MPV17(4)
0.032 0.500 3.76e-3 4.81e-3 ✓ sig. —
Dermatosparaxis ehlers-danlos syndrome Heart valve prolapse
1 gene
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1 of 1 corroborated by 2+ sources
0.032 0.500 3.76e-3 4.81e-3 ✓ sig. —
Congenital myasthenic syndrome Intellectual developmental disorder autism dysmorphic
1 gene
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1 of 1 corroborated by 2+ sources
CHD8(5)
0.032 0.500 3.76e-3 4.81e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.