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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Coronary restenosis Leukocyte adhesion deficiency
1 gene
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1 of 1 corroborated by 2+ sources
ITGB2(6)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Male infertility y chromosome microdeletion Spermatogenic failure, y-linked
1 gene
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1 of 1 corroborated by 2+ sources
USP9Y(4)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Lymphoproliferative syndrome MHC class I deficiency
1 gene
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1 of 1 corroborated by 2+ sources
TAP2(2)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Cleft palate and bilateral cleft lip Mitochondrial encephalopathy
1 gene
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COX3(1)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. Cluster 32 →
Crisponi syndrome Esophageal ulcer
1 gene
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1 of 1 corroborated by 2+ sources
CRLF1(5)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Bouillaud’s disease Fatigue syndrome
1 gene
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0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Cerebral artery occlusion Hyperemia
1 gene
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1 of 1 corroborated by 2+ sources
ADCYAP1(3)
0.059 0.333 2.73e-3 3.66e-3 ✓ sig. —
Beta thalassemia Chorioretinal atrophy
1 gene
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-(1)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Bladder exstrophy Vitreous body disease
1 gene
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NCKAP5(1)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Cardiofacial dysplasia Cushing syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKACB(5)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Ataxia Ophthalmoplegia
1 gene
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1 of 1 corroborated by 2+ sources
NPC1(2)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Acrodysostosis Cushing syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PRKAR1A(3)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Craniofacial dysplasia short stature ectodermal anomalies intellectual disability syndrome Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(4)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Ataxia Parkinsonian-pyramidal syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SNCA(2)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Hemorrhagic disease qualitative platelet defect
1 gene
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1 of 1 corroborated by 2+ sources
TBXA2R(3)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. Cluster 33 →
Developmental delay with short stature and dysmorphic facial features Intracerebral hemorrhage
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(6)
0.043 0.500 2.73e-3 3.66e-3 ✓ sig. —
Brain disease Dicarboxylic aminoaciduria
1 gene
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1 of 1 corroborated by 2+ sources
SLC1A1(7)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
dilated cardiomyopathy 1V Jeune syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PSEN2(3)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 22 →
Breast/nipple aplasia or hypoplasia Hyperinsulinism
1 gene
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1 of 1 corroborated by 2+ sources
PTPRF(5)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
coffin-lowry syndrome Ventricular septal defect
1 gene
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1 of 1 corroborated by 2+ sources
RPS6KA3(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Hypospadias Rhizomelic limb shortening with dysmorphic features
1 gene
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1 of 1 corroborated by 2+ sources
PKDCC(5)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 21 →
Right hypoplastic heart syndrome Ventricular septal defect
1 gene
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TBX20(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Say meyer syndrome Ventricular septal defect
1 gene
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HUWE1(1)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. —
Hypospadias schuurs-hoeijmakers syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PACS1(2)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 21 →
Jeune syndrome short-rib thoracic dysplasia 11 with or without polydactyly
1 gene
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1 of 1 corroborated by 2+ sources
DYNC2I2(4)
0.023 1.000 2.73e-3 3.66e-3 ✓ sig. Cluster 22 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.