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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
Laryngeal carcinoma Male reproductive system disease
1 gene
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WNT7B(1)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Autoimmune nervous system disorder Peritoneal neoplasms
1 gene
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1 of 1 corroborated by 2+ sources
MCAM(2)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. Cluster 35 →
Contracture Male reproductive system disease
1 gene
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WNT7B(1)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Brain edema Mirror movements
1 gene
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1 of 1 corroborated by 2+ sources
NTN1(4)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Congenital dyserythropoietic anemia Tyrosinemia
1 gene
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GCDH(1)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
monogenic diabetes Wallerian degeneration
1 gene
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1 of 1 corroborated by 2+ sources
SIRT1(2)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Porphyria X-linked sideroblastic anemia
1 gene
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1 of 1 corroborated by 2+ sources
ALAS2(5)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Coronary syndrome Endometrial hyperplasia
1 gene
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1 of 1 corroborated by 2+ sources
CELSR2(3)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Common migraine Coronary syndrome
1 gene
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1 of 1 corroborated by 2+ sources
PHACTR1(2)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Antisocial personality disorder Congenital dyserythropoietic anemia
1 gene
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ABCB1(1)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. Cluster 57 →
Brain edema Congenital mirror movements
1 gene
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1 of 1 corroborated by 2+ sources
NTN1(3)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Ap-4 deficiency syndrome Brain atrophy
1 gene
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1 of 1 corroborated by 2+ sources
AP4M1(3)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Ap4-related intellectual disability and spastic paraplegia Brain atrophy
1 gene
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1 of 1 corroborated by 2+ sources
AP4M1(2)
0.071 0.250 2.60e-3 3.51e-3 ✓ sig. —
Aortic atherosclerosis Hypertensive nephropathy
1 gene
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NYAP2(1)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Urethral syndrome Visual disorder
1 gene
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MAGI2(1)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Congenital diaphragmatic hernia Witteveen-kolk syndrome
1 gene
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1 of 1 corroborated by 2+ sources
SIN3A(4)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. Cluster 343 →
Dandy-walker syndrome Developmental delay with short stature and dysmorphic facial features
1 gene
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1 of 1 corroborated by 2+ sources
DPH1(7)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
immunodeficiency 104 Upper respiratory tract disorder
1 gene
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1 of 1 corroborated by 2+ sources
IL7R(2)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. Cluster 137 →
Bulimia Dysphonia
1 gene
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COMT(1)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. Cluster 97 →
Growth hormone insensitivity syndrome Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
STAT5B(3)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Growth hormone insensitivity syndrome with immune dysregulation Splenomegaly
1 gene
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1 of 1 corroborated by 2+ sources
STAT5B(5)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Congenital cataract microcornea with corneal opacity Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
PXDN(3)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Platelet-type bleeding disorder qualitative platelet defect
1 gene
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1 of 1 corroborated by 2+ sources
TBXA2R(5)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. Cluster 33 →
Dandy-walker syndrome Noonan syndrome-like disorder with loose anagen hair
1 gene
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1 of 1 corroborated by 2+ sources
PPP1CB(2)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —
Hereditary folate malabsorption Visual disorder
1 gene
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1 of 1 corroborated by 2+ sources
SARM1(2)
0.045 0.500 2.60e-3 3.51e-3 ✓ sig. —

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.