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What do these columns mean?
Shared genes
Curated genes linked to both diseases (disease_gdp). The line below it shows how many of those are "corroborated" -- backed by 2+ independent database sources combined across both diseases, not resting on a single source's say-so.
Similarity score
Jaccard-based: shared genes ÷ the union of both diseases' entire gene sets, with a small boost from users who bookmarked both diseases. Treats both diseases symmetrically.
Overlap coefficient
Shared genes ÷ the smaller disease's own total gene count. Complements the similarity score above for asymmetric pairs -- e.g. a rare disease almost entirely "contained" in a common disease's much larger gene set scores low on Jaccard but high here.
P-value / FDR q-value
Is this gene overlap more than chance? An upper-tail hypergeometric test, Benjamini-Hochberg corrected across every tested pair (the q-value is the one that accounts for testing thousands of pairs at once -- prefer it over the raw p-value).
Shared cluster
Links to a multi-disease cluster (see Disease Clusters) if both diseases of this pair were independently grouped together by that separate analysis.
ⓘ Shows only pairs whose gene overlap is too large to be down to chance (FDR q-value below 0.05). These are the rows marked ✓ sig. in the table. ⓘ Shows only pairs where both diseases also belong to the same group on the Disease Clusters page. Two separate analyses agree they're related, so the link is stronger. These are the rows with a link in the Shared cluster column.
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Disease A ⇵Disease B ⇵Shared genes ⇵Similarity score ⇵Overlap coefficient ⇵P-value ⇵FDR q-value ▲ Shared cluster
RDH12-related recessive retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
RDH12(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Congenital nephrotic syndrome Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
NPHS1(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 30 →
Congenital plasminogen activator inhibitor deficiency type 1 Diabetic angiopathies
1 gene
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1 of 1 corroborated by 2+ sources
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Congenital primary lymphedema of gordon Mastocytosis
1 gene
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1 of 1 corroborated by 2+ sources
VEGFC(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Corneal degeneration Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
RDH8(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 7 →
Creatine transporter deficiency Internet addiction disorder
1 gene
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1 of 1 corroborated by 2+ sources
SLC6A8(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Cystic kidney disease with ventriculomegaly Idiopathic steroid-resistant nephrotic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
CRB2(3)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Diverticulitis Retinitis pigmentosa with or without skeletal anomalies
1 gene
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1 of 1 corroborated by 2+ sources
CWC27(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 373 →
Leber hereditary optic neuropathy RP1-related dominant retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Leber hereditary optic neuropathy RP1-related recessive retinopathy
1 gene
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1 of 1 corroborated by 2+ sources
RP1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Internet addiction disorder Separation anxiety disorder
1 gene
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1 of 1 corroborated by 2+ sources
DRD4(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
SNRNP200-related dominant retinopathy Stargardt disease
1 gene
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1 of 1 corroborated by 2+ sources
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. Cluster 7 →
Hereditary parkinson disease spinocerebellar ataxia type 2
1 gene
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1 of 1 corroborated by 2+ sources
ATXN2(4)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Mastocytosis sulfite oxidase deficiency due to molybdenum cofactor deficiency type A
1 gene
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1 of 1 corroborated by 2+ sources
MOCS1(2)
0.034 1.000 1.82e-3 2.68e-3 ✓ sig. —
Hearing loss Lipoyltransferase deficiency
2 genes
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1 of 2 corroborated by 2+ sources
LIPT1(6), MITD1(1)
0.005 0.667 1.86e-3 2.74e-3 ✓ sig. —
Congenital contractural arachnodactyly loeys-dietz syndrome 6
1 gene
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1 of 1 corroborated by 2+ sources
SMAD2(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 12 →
Congenital contractural arachnodactyly meester-loeys syndrome
1 gene
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1 of 1 corroborated by 2+ sources
BGN(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Congenital myasthenic syndrome myasthenic syndrome, congenital, 1b, fast-channel
1 gene
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1 of 1 corroborated by 2+ sources
CHRNA1(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →
Congenital contractural arachnodactyly Rienhoff syndrome
1 gene
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1 of 1 corroborated by 2+ sources
TGFB3(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly holoprosencephaly 12 with or without pancreatic agenesis
1 gene
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1 of 1 corroborated by 2+ sources
CNOT1(5)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Holoprosencephaly holoprosencephaly-hypokinesia-congenital contractures syndrome
1 gene
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1 of 1 corroborated by 2+ sources
GPKOW(3)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 96 →
Congenital contractural arachnodactyly Homocystinuria
1 gene
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1 of 1 corroborated by 2+ sources
CBS(4)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Acheiropody Holoprosencephaly
1 gene
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1 of 1 corroborated by 2+ sources
LMBR1(2)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. —
Adenosine deaminase 2 deficiency Vasculitis
1 gene
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1 of 1 corroborated by 2+ sources
ADA2(7)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 136 →
ALG2-congenital disorder of glycosylation Congenital myasthenic syndrome
1 gene
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1 of 1 corroborated by 2+ sources
ALG2(6)
0.033 1.000 1.88e-3 2.76e-3 ✓ sig. Cluster 34 →

Showing 25 of 20813 pairs, sorted by significance (ascending). Click a column header to sort.